Cluster: HRGMv2_2788_CGC22
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2788
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_1916 | 2079897 | 2081759 | + | 3.A.16.1.2 |
| NULL(UNKNOWN) | HRGMv2_2788_1 | HRGMv2_2788_1_1917 | 2081910 | 2082542 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_1918 | 2082898 | 2083764 | - | 3.A.1.1.48 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_1919 | 2083767 | 2084741 | - | 3.A.1.1.4 |
| NULL(UNKNOWN) | HRGMv2_2788_1 | HRGMv2_2788_1_1920 | 2084836 | 2086281 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2788_1 | HRGMv2_2788_1_1921 | 2086378 | 2087385 | - | LacI |
| CAZyme | HRGMv2_2788_1 | HRGMv2_2788_1_1922 | 2087983 | 2090418 | + | GH94 |
| STP | HRGMv2_2788_1 | HRGMv2_2788_1_1923 | 2090514 | 2092064 | - | GGDEF |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_1924 | 2092077 | 2093903 | - | 1.A.33.1.4 |
| pfam | HRGMv2_2788_1 | HRGMv2_2788_1_1925 | 2094004 | 2095068 | - | SseB | Sel1 | Sel1 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_1926 | 2095209 | 2096948 | + | 3.A.1.135.7 |
| TC | HRGMv2_2788_1 | HRGMv2_2788_1_1927 | 2096945 | 2098720 | + | 3.A.1.135.7 |
Gene ID: HRGMv2_2788_1_1916
Type: TC
Location: 2079897 - 2081759 (+)
Type: TC
Location: 2079897 - 2081759 (+)
Gene ID: HRGMv2_2788_1_1917
Type:
Location: 2081910 - 2082542 (+)
Type:
Location: 2081910 - 2082542 (+)
Gene ID: HRGMv2_2788_1_1918
Type: TC
Location: 2082898 - 2083764 (-)
Type: TC
Location: 2082898 - 2083764 (-)
Gene ID: HRGMv2_2788_1_1919
Type: TC
Location: 2083767 - 2084741 (-)
Type: TC
Location: 2083767 - 2084741 (-)
Gene ID: HRGMv2_2788_1_1920
Type:
Location: 2084836 - 2086281 (-)
Type:
Location: 2084836 - 2086281 (-)
Gene ID: HRGMv2_2788_1_1921
Type: TF
Location: 2086378 - 2087385 (-)
Type: TF
Location: 2086378 - 2087385 (-)
Gene ID: HRGMv2_2788_1_1922
Type: CAZyme
Location: 2087983 - 2090418 (+)
Type: CAZyme
Location: 2087983 - 2090418 (+)
Gene ID: HRGMv2_2788_1_1923
Type: STP
Location: 2090514 - 2092064 (-)
Type: STP
Location: 2090514 - 2092064 (-)
Gene ID: HRGMv2_2788_1_1924
Type: TC
Location: 2092077 - 2093903 (-)
Type: TC
Location: 2092077 - 2093903 (-)
Gene ID: HRGMv2_2788_1_1925
Type: pfam
Location: 2094004 - 2095068 (-)
Type: pfam
Location: 2094004 - 2095068 (-)
Gene ID: HRGMv2_2788_1_1926
Type: TC
Location: 2095209 - 2096948 (+)
Type: TC
Location: 2095209 - 2096948 (+)
Gene ID: HRGMv2_2788_1_1927
Type: TC
Location: 2096945 - 2098720 (+)
Type: TC
Location: 2096945 - 2098720 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_I
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.