dbCAN Logo

PROTEIN: HRGMv2_2788_1_1920

Loading protein structure...

Protein File & Metadata
Download PDB File
Source:
HRGMv2_2788_1_1920.pdb
Genome ID:
HRGMv2_2788
Protein ID:
HRGMv2_2788_1_1920

Loading protein structure information...

Detailed structural information will appear here after analysis...

Protein Sequence 
MKKISRRNFL   LASGAVTISA   ALTACGGSSS   STAPASSAAP   ASSAASSAAP   AAGGKVLNIW 60
CWNDEFQSRF   NDYYPEVKEI   AADKSTTTLN   DGTVVKWTIN   ANENNNYQNK   LDEALLSQDS 120
AADDDKIDIF   LIEADYALKY   VDSDYVLDVK   ADIGLTDSDL   AGQYQYTKDI   VSVDGSQRGT 180
TWQATPGLFA   YRRSIAKDVL   GTDDPTEVQT   YLSDWDKFND   VAAQAAAKGY   KMLSGFDDAY 240
RTFSNNVAAP   WVDGTTVKVD   PNIMKWVDQT   KEYTDKGYNN   KSSLWDSQWA   ADQGPTGKVF 300
GFFYSTWGIN   FTLLGNSLET   PVAEGGKEEV   GNGIYGDYAV   CEGPQPYYWG   GTWICGAAGS 360
DNIETIKDVM   QKLTCDEAIM   KQITMDTQDY   TNNEKAMEEI   AASDYSSAFL   GGQNHIALFA 420
EAAKKIDMSN   AGPYDQGLNE   SFQNAFKDYF   TGNVDEDTAK   ANFETAIKEK   YPELTDVVWP 480
A 481
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs - AFDB
Target Q-Start Q-End T-Start T-End Avg TM Align TM
AF-K0F002-F1-model_v4 50 474 43 439 0.7072 0.8272
AF-K0EWS5-F1-model_v4 51 480 24 457 0.7057 0.7832
AF-P71619-F1-model_v4 36 476 21 429 0.702 0.797
AF-K0F2E6-F1-model_v4 31 476 20 437 0.7013 0.7864
AF-K0EWS9-F1-model_v4 48 475 45 463 0.6987 0.7983
AF-A0A133CPC5-F1-model_v4 49 475 30 423 0.6981 0.8094
AF-Q8DNU8-F1-model_v4 23 475 5 440 0.6899 0.7458
AF-Q8DNN7-F1-model_v4 54 475 34 434 0.6892 0.7987
AF-A0A132Z3C8-F1-model_v4 54 474 32 428 0.6861 0.7956
AF-K0F8J3-F1-model_v4 53 475 29 436 0.6854 0.7819
Download Full AFDB Results
Structural Homologs - CAZyme3D-Whole
Target CAZyme Family Q-Start Q-End T-Start T-End Avg TM Align TM
AF-K8EJG7-F1-model_v4 CBM50 , CE4 52 476 32 416 0.6577 0.7752
AF-K8E205-F1-model_v4 GH32 53 454 34 344 0.6115 0.7945
A0A9Q8PNJ5 GH4 18 474 227 866 0.5347 0.7248
AF-A0A7U1BNH7-F1-model_v4 GH10 52 478 28 735 0.5338 0.7295
AF-A0A1B0VLS2-F1-model_v4 CBM0 49 476 542 948 0.488 0.7632
Download Full CAZyme3D-Whole Results
Structural Homologs - CAZyme-ID50
Target CAZyme Family Q-Start Q-End T-Start T-End Avg TM Align TM
K8EJG7 CBM50 , CE4 52 476 32 416 0.6577 0.7752
K8E205 GH32 53 454 34 344 0.6115 0.7945
A0A9Q8PNJ5 GH4 18 474 227 866 0.5347 0.7248
A0A7U1BNH7 GH10 52 478 28 735 0.5338 0.7295
Download Full CAZyme-ID50 Results
Structural Homologs - PDB
Target Q-Start Q-End T-Start T-End Avg TM Align TM
5ixp-assembly1.cif.gz_A 52 472 1 393 0.8081 0.9005
3uor-assembly2.cif.gz_B 55 476 1 389 0.7495 0.8492
6x84-assembly2.cif.gz_B 52 475 1 411 0.7354 0.8104
7vfq-assembly1.cif.gz_A 54 478 1 394 0.7316 0.8205
2z8d-assembly2.cif.gz_B 48 478 1 399 0.7314 0.8159
6wpn-assembly1.cif.gz_A 56 476 1 395 0.7312 0.819
7vfq-assembly2.cif.gz_B 54 478 1 396 0.7304 0.8173
7vfr-assembly1.cif.gz_A 54 478 1 397 0.7303 0.8162
2z8d-assembly1.cif.gz_A 50 478 1 401 0.729 0.8119
7vfq-assembly4.cif.gz_D 54 478 1 397 0.7281 0.814
Download Full PDB Results
Structural Homologs - SwissProt
Target Q-Start Q-End T-Start T-End Avg TM Align TM
AF-P29822-F1-model_v4 52 472 26 422 0.75 0.8591
AF-P94528-F1-model_v4 53 473 32 433 0.7394 0.8473
AF-Q9K491-F1-model_v4 43 474 21 424 0.7145 0.8114
AF-Q9KEE7-F1-model_v4 54 475 44 445 0.7119 0.8285
AF-Q8FVS7-F1-model_v4 52 475 23 411 0.6985 0.8091
AF-Q578M8-F1-model_v4 52 475 23 411 0.698 0.8086
AF-Q2YKZ9-F1-model_v4 52 475 23 411 0.6968 0.8073
AF-Q53684-F1-model_v4 39 474 15 423 0.69 0.7976
AF-O07009-F1-model_v4 43 476 25 419 0.6868 0.794
AF-Q55471-F1-model_v4 39 473 18 421 0.6838 0.7734
Download Full SwissProt Results