Cluster: HRGMv2_2748_CGC40
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2748
- CGC Family ID: CGCFAM_06919
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2733 | 3004250 | 3005110 | + | GT2 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2734 | 3005141 | 3006295 | + | GT4 |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_2735 | 3006316 | 3007527 | + | Amino_oxidase | NAD_binding_8 |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_2736 | 3007537 | 3008667 | + | Glycos_transf_1 | Glyco_trans_1_4 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2737 | 3008683 | 3009990 | + | 2.A.66.10.1 |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_2738 | 3010012 | 3010959 | + | Acyl_transf_3 |
| TC | HRGMv2_2748_1 | HRGMv2_2748_1_2739 | 3011539 | 3012879 | + | 9.B.18.1.3 |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2740 | 3012892 | 3013638 | + | GT2 |
| pfam | HRGMv2_2748_1 | HRGMv2_2748_1_2741 | 3013661 | 3014521 | + | LicD |
| NULL(UNKNOWN) | HRGMv2_2748_1 | HRGMv2_2748_1_2742 | 3014522 | 3015112 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2748_1 | HRGMv2_2748_1_2743 | 3015129 | 3015668 | + | GT4 |
Gene ID: HRGMv2_2748_1_2733
Type: CAZyme
Location: 3004250 - 3005110 (+)
Type: CAZyme
Location: 3004250 - 3005110 (+)
Gene ID: HRGMv2_2748_1_2734
Type: CAZyme
Location: 3005141 - 3006295 (+)
Type: CAZyme
Location: 3005141 - 3006295 (+)
Gene ID: HRGMv2_2748_1_2735
Type: pfam
Location: 3006316 - 3007527 (+)
Type: pfam
Location: 3006316 - 3007527 (+)
Gene ID: HRGMv2_2748_1_2736
Type: pfam
Location: 3007537 - 3008667 (+)
Type: pfam
Location: 3007537 - 3008667 (+)
Gene ID: HRGMv2_2748_1_2737
Type: TC
Location: 3008683 - 3009990 (+)
Type: TC
Location: 3008683 - 3009990 (+)
Gene ID: HRGMv2_2748_1_2738
Type: pfam
Location: 3010012 - 3010959 (+)
Type: pfam
Location: 3010012 - 3010959 (+)
Gene ID: HRGMv2_2748_1_2739
Type: TC
Location: 3011539 - 3012879 (+)
Type: TC
Location: 3011539 - 3012879 (+)
Gene ID: HRGMv2_2748_1_2740
Type: CAZyme
Location: 3012892 - 3013638 (+)
Type: CAZyme
Location: 3012892 - 3013638 (+)
Gene ID: HRGMv2_2748_1_2741
Type: pfam
Location: 3013661 - 3014521 (+)
Type: pfam
Location: 3013661 - 3014521 (+)
Gene ID: HRGMv2_2748_1_2742
Type:
Location: 3014522 - 3015112 (+)
Type:
Location: 3014522 - 3015112 (+)
Gene ID: HRGMv2_2748_1_2743
Type: CAZyme
Location: 3015129 - 3015668 (+)
Type: CAZyme
Location: 3015129 - 3015668 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900540595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.