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Cluster: HRGMv2_2683_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2683_12 HRGMv2_2683_12_10 11460 11975 - 3.A.1.26.5
CAZyme HRGMv2_2683_12 HRGMv2_2683_12_11 12860 15295 - GH94
TF HRGMv2_2683_12 HRGMv2_2683_12_12 15824 16831 + LacI
NULL(UNKNOWN) HRGMv2_2683_12 HRGMv2_2683_12_13 16911 18350 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2683_12 HRGMv2_2683_12_14 18448 19425 + 3.A.1.1.4
TC HRGMv2_2683_12 HRGMv2_2683_12_15 19428 20294 + 3.A.1.1.48
pfam HRGMv2_2683_12 HRGMv2_2683_12_16 20789 21199 - Pep_deformylase
TC HRGMv2_2683_12 HRGMv2_2683_12_17 21213 22493 - 2.A.26.1.1
pfam HRGMv2_2683_12 HRGMv2_2683_12_18 22704 23474 + BPD_transp_1
TC HRGMv2_2683_12 HRGMv2_2683_12_19 23468 24052 + 3.A.1.19.1
TC HRGMv2_2683_12 HRGMv2_2683_12_20 24165 25382 - 2.A.103.1.7
Gene ID: HRGMv2_2683_12_10
Type: TC
Location: 11460 - 11975 (-)
Gene ID: HRGMv2_2683_12_11
Type: CAZyme
Location: 12860 - 15295 (-)
Gene ID: HRGMv2_2683_12_12
Type: TF
Location: 15824 - 16831 (+)
Gene ID: HRGMv2_2683_12_13
Type:
Location: 16911 - 18350 (+)
Gene ID: HRGMv2_2683_12_14
Type: TC
Location: 18448 - 19425 (+)
Gene ID: HRGMv2_2683_12_15
Type: TC
Location: 19428 - 20294 (+)
Gene ID: HRGMv2_2683_12_16
Type: pfam
Location: 20789 - 21199 (-)
Gene ID: HRGMv2_2683_12_17
Type: TC
Location: 21213 - 22493 (-)
Gene ID: HRGMv2_2683_12_18
Type: pfam
Location: 22704 - 23474 (+)
Gene ID: HRGMv2_2683_12_19
Type: TC
Location: 23468 - 24052 (+)
Gene ID: HRGMv2_2683_12_20
Type: TC
Location: 24165 - 25382 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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