Cluster: HRGMv2_2552_CGC14
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate: host glycan
- Genome ID: HRGMv2_2552
- CGC Family ID: CGCFAM_00243
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2552_39 | HRGMv2_2552_39_3 | 2630 | 3790 | - | CE9 |
| CAZyme | HRGMv2_2552_39 | HRGMv2_2552_39_4 | 3928 | 5088 | - | CE9 |
| STP | HRGMv2_2552_39 | HRGMv2_2552_39_5 | 5202 | 6374 | - | SIS |
| NULL(UNKNOWN) | HRGMv2_2552_39 | HRGMv2_2552_39_6 | 6402 | 8417 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2552_39 | HRGMv2_2552_39_7 | 8410 | 8832 | - | 4.A.6.1.8 |
| TC | HRGMv2_2552_39 | HRGMv2_2552_39_8 | 8846 | 9661 | - | 4.A.6.1.18 |
| TC | HRGMv2_2552_39 | HRGMv2_2552_39_9 | 9648 | 10577 | - | 4.A.6.1.18 |
| TC | HRGMv2_2552_39 | HRGMv2_2552_39_10 | 10600 | 11088 | - | 4.A.6.1.18 |
| TF | HRGMv2_2552_39 | HRGMv2_2552_39_11 | 11122 | 11838 | - | GntR |
| pfam | HRGMv2_2552_39 | HRGMv2_2552_39_12 | 12185 | 12559 | - | Ribonuc_L-PSP |
| TC | HRGMv2_2552_39 | HRGMv2_2552_39_13 | 12578 | 13051 | - | 4.A.1.1.1 |
| STP | HRGMv2_2552_39 | HRGMv2_2552_39_14 | 13064 | 14260 | - | Aminotran_1_2 |
| TC | HRGMv2_2552_39 | HRGMv2_2552_39_15 | 14276 | 15844 | - | 4.A.1.1.3 |
Gene ID: HRGMv2_2552_39_3
Type: CAZyme
Location: 2630 - 3790 (-)
Type: CAZyme
Location: 2630 - 3790 (-)
Gene ID: HRGMv2_2552_39_4
Type: CAZyme
Location: 3928 - 5088 (-)
Type: CAZyme
Location: 3928 - 5088 (-)
Gene ID: HRGMv2_2552_39_5
Type: STP
Location: 5202 - 6374 (-)
Type: STP
Location: 5202 - 6374 (-)
Gene ID: HRGMv2_2552_39_6
Type:
Location: 6402 - 8417 (-)
Type:
Location: 6402 - 8417 (-)
Gene ID: HRGMv2_2552_39_7
Type: TC
Location: 8410 - 8832 (-)
Type: TC
Location: 8410 - 8832 (-)
Gene ID: HRGMv2_2552_39_8
Type: TC
Location: 8846 - 9661 (-)
Type: TC
Location: 8846 - 9661 (-)
Gene ID: HRGMv2_2552_39_9
Type: TC
Location: 9648 - 10577 (-)
Type: TC
Location: 9648 - 10577 (-)
Gene ID: HRGMv2_2552_39_10
Type: TC
Location: 10600 - 11088 (-)
Type: TC
Location: 10600 - 11088 (-)
Gene ID: HRGMv2_2552_39_11
Type: TF
Location: 11122 - 11838 (-)
Type: TF
Location: 11122 - 11838 (-)
Gene ID: HRGMv2_2552_39_12
Type: pfam
Location: 12185 - 12559 (-)
Type: pfam
Location: 12185 - 12559 (-)
Gene ID: HRGMv2_2552_39_13
Type: TC
Location: 12578 - 13051 (-)
Type: TC
Location: 12578 - 13051 (-)
Gene ID: HRGMv2_2552_39_14
Type: STP
Location: 13064 - 14260 (-)
Type: STP
Location: 13064 - 14260 (-)
Gene ID: HRGMv2_2552_39_15
Type: TC
Location: 14276 - 15844 (-)
Type: TC
Location: 14276 - 15844 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Companilactobacillus
Species
Companilactobacillus formosensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.