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Cluster: HRGMv2_2521_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2521_1 HRGMv2_2521_1_135 140435 141319 + 3.A.1.14.17
TC HRGMv2_2521_1 HRGMv2_2521_1_136 141298 142269 + 3.A.1.14.10
TC HRGMv2_2521_1 HRGMv2_2521_1_137 142256 143017 + 3.A.1.14.7
pfam HRGMv2_2521_1 HRGMv2_2521_1_138 143111 144619 - FGGY_N | FGGY_C
NULL(UNKNOWN) HRGMv2_2521_1 HRGMv2_2521_1_139 144743 146092 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2521_1 HRGMv2_2521_1_140 146402 148441 - GH120
TC HRGMv2_2521_1 HRGMv2_2521_1_141 148463 149959 - 2.A.2.3.2
TF HRGMv2_2521_1 HRGMv2_2521_1_142 150112 151017 - HTH_AraC | HTH_AraC
TC HRGMv2_2521_1 HRGMv2_2521_1_143 151295 151432 + 2.A.1.1.41
TC HRGMv2_2521_1 HRGMv2_2521_1_144 151703 152692 + 2.A.1.1.41
Gene ID: HRGMv2_2521_1_135
Type: TC
Location: 140435 - 141319 (+)
Gene ID: HRGMv2_2521_1_136
Type: TC
Location: 141298 - 142269 (+)
Gene ID: HRGMv2_2521_1_137
Type: TC
Location: 142256 - 143017 (+)
Gene ID: HRGMv2_2521_1_138
Type: pfam
Location: 143111 - 144619 (-)
Gene ID: HRGMv2_2521_1_139
Type:
Location: 144743 - 146092 (-)
Gene ID: HRGMv2_2521_1_140
Type: CAZyme
Location: 146402 - 148441 (-)
Gene ID: HRGMv2_2521_1_141
Type: TC
Location: 148463 - 149959 (-)
Gene ID: HRGMv2_2521_1_142
Type: TF
Location: 150112 - 151017 (-)
Gene ID: HRGMv2_2521_1_143
Type: TC
Location: 151295 - 151432 (+)
Gene ID: HRGMv2_2521_1_144
Type: TC
Location: 151703 - 152692 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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