Cluster: HRGMv2_2520_CGC20
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_2520
- CGC Family ID: CGCFAM_00003
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2520_14 | HRGMv2_2520_14_9 | 7608 | 8957 | - | GT2 |
| TC | HRGMv2_2520_14 | HRGMv2_2520_14_10 | 8970 | 10193 | - | 3.A.1.103.5 |
| pfam | HRGMv2_2520_14 | HRGMv2_2520_14_11 | 10193 | 10999 | - | ABC2_membrane |
| CAZyme | HRGMv2_2520_14 | HRGMv2_2520_14_12 | 10999 | 11940 | - | GT2 |
| CAZyme | HRGMv2_2520_14 | HRGMv2_2520_14_13 | 11937 | 13085 | - | GT4 |
| pfam | HRGMv2_2520_14 | HRGMv2_2520_14_14 | 13193 | 14044 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | HRGMv2_2520_14 | HRGMv2_2520_14_15 | 14109 | 15035 | - | GT2 |
| pfam | HRGMv2_2520_14 | HRGMv2_2520_14_16 | 15126 | 16640 | - | DUF2142 |
| CAZyme | HRGMv2_2520_14 | HRGMv2_2520_14_17 | 16637 | 17791 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_2520_14 | HRGMv2_2520_14_18 | 17795 | 19054 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2520_14 | HRGMv2_2520_14_19 | 19047 | 19388 | - | DUF2304 |
| CAZyme | HRGMv2_2520_14 | HRGMv2_2520_14_20 | 19390 | 20088 | - | GT2 |
| pfam | HRGMv2_2520_14 | HRGMv2_2520_14_21 | 20245 | 21264 | - | adh_short | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | KR | GDP_Man_Dehyd |
| peptidase | HRGMv2_2520_14 | HRGMv2_2520_14_22 | 21440 | 24427 | - | S15.UPW |
| TC | HRGMv2_2520_14 | HRGMv2_2520_14_23 | 24702 | 25772 | - | 3.A.1.11.7 |
| TC | HRGMv2_2520_14 | HRGMv2_2520_14_24 | 25769 | 26542 | - | 3.A.1.11.7 |
| TC | HRGMv2_2520_14 | HRGMv2_2520_14_25 | 26539 | 27345 | - | 3.A.1.11.7 |
| TC | HRGMv2_2520_14 | HRGMv2_2520_14_26 | 27326 | 28483 | - | 3.A.1.11.7 |
Gene ID: HRGMv2_2520_14_9
Type: CAZyme
Location: 7608 - 8957 (-)
Type: CAZyme
Location: 7608 - 8957 (-)
Gene ID: HRGMv2_2520_14_10
Type: TC
Location: 8970 - 10193 (-)
Type: TC
Location: 8970 - 10193 (-)
Gene ID: HRGMv2_2520_14_11
Type: pfam
Location: 10193 - 10999 (-)
Type: pfam
Location: 10193 - 10999 (-)
Gene ID: HRGMv2_2520_14_12
Type: CAZyme
Location: 10999 - 11940 (-)
Type: CAZyme
Location: 10999 - 11940 (-)
Gene ID: HRGMv2_2520_14_13
Type: CAZyme
Location: 11937 - 13085 (-)
Type: CAZyme
Location: 11937 - 13085 (-)
Gene ID: HRGMv2_2520_14_14
Type: pfam
Location: 13193 - 14044 (-)
Type: pfam
Location: 13193 - 14044 (-)
Gene ID: HRGMv2_2520_14_15
Type: CAZyme
Location: 14109 - 15035 (-)
Type: CAZyme
Location: 14109 - 15035 (-)
Gene ID: HRGMv2_2520_14_16
Type: pfam
Location: 15126 - 16640 (-)
Type: pfam
Location: 15126 - 16640 (-)
Gene ID: HRGMv2_2520_14_17
Type: CAZyme
Location: 16637 - 17791 (-)
Type: CAZyme
Location: 16637 - 17791 (-)
Gene ID: HRGMv2_2520_14_18
Type:
Location: 17795 - 19054 (-)
Type:
Location: 17795 - 19054 (-)
Gene ID: HRGMv2_2520_14_19
Type: pfam
Location: 19047 - 19388 (-)
Type: pfam
Location: 19047 - 19388 (-)
Gene ID: HRGMv2_2520_14_20
Type: CAZyme
Location: 19390 - 20088 (-)
Type: CAZyme
Location: 19390 - 20088 (-)
Gene ID: HRGMv2_2520_14_21
Type: pfam
Location: 20245 - 21264 (-)
Type: pfam
Location: 20245 - 21264 (-)
Gene ID: HRGMv2_2520_14_22
Type: peptidase
Location: 21440 - 24427 (-)
Type: peptidase
Location: 21440 - 24427 (-)
Gene ID: HRGMv2_2520_14_23
Type: TC
Location: 24702 - 25772 (-)
Type: TC
Location: 24702 - 25772 (-)
Gene ID: HRGMv2_2520_14_24
Type: TC
Location: 25769 - 26542 (-)
Type: TC
Location: 25769 - 26542 (-)
Gene ID: HRGMv2_2520_14_25
Type: TC
Location: 26539 - 27345 (-)
Type: TC
Location: 26539 - 27345 (-)
Gene ID: HRGMv2_2520_14_26
Type: TC
Location: 27326 - 28483 (-)
Type: TC
Location: 27326 - 28483 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.