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Cluster: HRGMv2_2516_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2516_13 HRGMv2_2516_13_25 21836 22801 + 3.A.1.1.10
TC HRGMv2_2516_13 HRGMv2_2516_13_26 22821 23747 + 3.A.1.1.29
TC HRGMv2_2516_13 HRGMv2_2516_13_27 23762 25396 + 3.A.1.1.10
TC HRGMv2_2516_13 HRGMv2_2516_13_28 25474 27111 + 3.A.1.1.10
TF HRGMv2_2516_13 HRGMv2_2516_13_29 27252 29432 - HTH_AraC
pfam HRGMv2_2516_13 HRGMv2_2516_13_30 29476 30141 - DUF624
CAZyme HRGMv2_2516_13 HRGMv2_2516_13_31 30169 32049 - GH20
NULL(UNKNOWN) HRGMv2_2516_13 HRGMv2_2516_13_32 32100 32564 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2516_13 HRGMv2_2516_13_33 32732 34069 + GH29
TC HRGMv2_2516_13 HRGMv2_2516_13_34 34086 35060 + 3.A.1.1.10
TC HRGMv2_2516_13 HRGMv2_2516_13_35 35079 36005 + 3.A.1.1.29
TC HRGMv2_2516_13 HRGMv2_2516_13_36 36020 37657 + 3.A.1.1.10
CAZyme HRGMv2_2516_13 HRGMv2_2516_13_37 37806 40883 + GH38
CAZyme HRGMv2_2516_13 HRGMv2_2516_13_38 40908 43202 + GH3
CAZyme HRGMv2_2516_13 HRGMv2_2516_13_39 43209 44594 + GH1
pfam HRGMv2_2516_13 HRGMv2_2516_13_40 44646 45353 + AIM24
TC HRGMv2_2516_13 HRGMv2_2516_13_41 45509 46249 + 3.A.1.15.8
TC HRGMv2_2516_13 HRGMv2_2516_13_42 46249 47166 + 3.A.1.15.6
TC HRGMv2_2516_13 HRGMv2_2516_13_43 47166 48116 + 3.A.1.15.2
NULL(UNKNOWN) HRGMv2_2516_13 HRGMv2_2516_13_44 48194 49111 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2516_13 HRGMv2_2516_13_45 49127 50491 - 4.A.3.2.2
TC HRGMv2_2516_13 HRGMv2_2516_13_46 50947 52584 + 2.A.55.2.6
pfam HRGMv2_2516_13 HRGMv2_2516_13_47 52568 53008 + Usp
pfam HRGMv2_2516_13 HRGMv2_2516_13_48 53218 54258 + Phosphonate-bd
TC HRGMv2_2516_13 HRGMv2_2516_13_49 54272 55033 + 3.A.1.9.1
pfam HRGMv2_2516_13 HRGMv2_2516_13_50 54996 55826 + BPD_transp_1
NULL(UNKNOWN) HRGMv2_2516_13 HRGMv2_2516_13_51 55823 56047 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2516_13 HRGMv2_2516_13_52 56093 56686 + 3.A.1.9.2
Gene ID: HRGMv2_2516_13_25
Type: TC
Location: 21836 - 22801 (+)
Gene ID: HRGMv2_2516_13_26
Type: TC
Location: 22821 - 23747 (+)
Gene ID: HRGMv2_2516_13_27
Type: TC
Location: 23762 - 25396 (+)
Gene ID: HRGMv2_2516_13_28
Type: TC
Location: 25474 - 27111 (+)
Gene ID: HRGMv2_2516_13_29
Type: TF
Location: 27252 - 29432 (-)
Gene ID: HRGMv2_2516_13_30
Type: pfam
Location: 29476 - 30141 (-)
Gene ID: HRGMv2_2516_13_31
Type: CAZyme
Location: 30169 - 32049 (-)
Gene ID: HRGMv2_2516_13_32
Type:
Location: 32100 - 32564 (-)
Gene ID: HRGMv2_2516_13_33
Type: CAZyme
Location: 32732 - 34069 (+)
Gene ID: HRGMv2_2516_13_34
Type: TC
Location: 34086 - 35060 (+)
Gene ID: HRGMv2_2516_13_35
Type: TC
Location: 35079 - 36005 (+)
Gene ID: HRGMv2_2516_13_36
Type: TC
Location: 36020 - 37657 (+)
Gene ID: HRGMv2_2516_13_37
Type: CAZyme
Location: 37806 - 40883 (+)
Gene ID: HRGMv2_2516_13_38
Type: CAZyme
Location: 40908 - 43202 (+)
Gene ID: HRGMv2_2516_13_39
Type: CAZyme
Location: 43209 - 44594 (+)
Gene ID: HRGMv2_2516_13_40
Type: pfam
Location: 44646 - 45353 (+)
Gene ID: HRGMv2_2516_13_41
Type: TC
Location: 45509 - 46249 (+)
Gene ID: HRGMv2_2516_13_42
Type: TC
Location: 46249 - 47166 (+)
Gene ID: HRGMv2_2516_13_43
Type: TC
Location: 47166 - 48116 (+)
Gene ID: HRGMv2_2516_13_44
Type:
Location: 48194 - 49111 (-)
Gene ID: HRGMv2_2516_13_45
Type: TC
Location: 49127 - 50491 (-)
Gene ID: HRGMv2_2516_13_46
Type: TC
Location: 50947 - 52584 (+)
Gene ID: HRGMv2_2516_13_47
Type: pfam
Location: 52568 - 53008 (+)
Gene ID: HRGMv2_2516_13_48
Type: pfam
Location: 53218 - 54258 (+)
Gene ID: HRGMv2_2516_13_49
Type: TC
Location: 54272 - 55033 (+)
Gene ID: HRGMv2_2516_13_50
Type: pfam
Location: 54996 - 55826 (+)
Gene ID: HRGMv2_2516_13_51
Type:
Location: 55823 - 56047 (+)
Gene ID: HRGMv2_2516_13_52
Type: TC
Location: 56093 - 56686 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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