Cluster: HRGMv2_2516_CGC27
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2516
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2516_11 | HRGMv2_2516_11_61 | 65253 | 65933 | - | 3.A.1.1.10 |
| CAZyme | HRGMv2_2516_11 | HRGMv2_2516_11_62 | 66797 | 69154 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_2516_11 | HRGMv2_2516_11_63 | 69184 | 70011 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2516_11 | HRGMv2_2516_11_64 | 70106 | 70951 | + | KduI |
| CAZyme | HRGMv2_2516_11 | HRGMv2_2516_11_65 | 70964 | 72094 | + | GH88 |
| CAZyme | HRGMv2_2516_11 | HRGMv2_2516_11_66 | 72108 | 73238 | + | GH154 |
| pfam | HRGMv2_2516_11 | HRGMv2_2516_11_67 | 73344 | 74426 | + | Mbeg1-like |
| pfam | HRGMv2_2516_11 | HRGMv2_2516_11_68 | 74592 | 75671 | + | PTS_EIIC_2 |
| TC | HRGMv2_2516_11 | HRGMv2_2516_11_69 | 75722 | 76477 | - | 3.A.1.14.2 |
| TC | HRGMv2_2516_11 | HRGMv2_2516_11_70 | 76477 | 76767 | - | 3.A.1.14.16 |
| TC | HRGMv2_2516_11 | HRGMv2_2516_11_71 | 76767 | 77468 | - | 3.A.1.14.20 |
| STP | HRGMv2_2516_11 | HRGMv2_2516_11_72 | 77452 | 78357 | - | Peripla_BP_2 |
| NULL(UNKNOWN) | HRGMv2_2516_11 | HRGMv2_2516_11_73 | 78354 | 78512 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2516_11 | HRGMv2_2516_11_74 | 78761 | 80230 | - | GH29 |
| CAZyme | HRGMv2_2516_11 | HRGMv2_2516_11_75 | 80432 | 81352 | + | GH43_24 |
Gene ID: HRGMv2_2516_11_61
Type: TC
Location: 65253 - 65933 (-)
Type: TC
Location: 65253 - 65933 (-)
Gene ID: HRGMv2_2516_11_62
Type: CAZyme
Location: 66797 - 69154 (+)
Type: CAZyme
Location: 66797 - 69154 (+)
Gene ID: HRGMv2_2516_11_63
Type:
Location: 69184 - 70011 (+)
Type:
Location: 69184 - 70011 (+)
Gene ID: HRGMv2_2516_11_64
Type: pfam
Location: 70106 - 70951 (+)
Type: pfam
Location: 70106 - 70951 (+)
Gene ID: HRGMv2_2516_11_65
Type: CAZyme
Location: 70964 - 72094 (+)
Type: CAZyme
Location: 70964 - 72094 (+)
Gene ID: HRGMv2_2516_11_66
Type: CAZyme
Location: 72108 - 73238 (+)
Type: CAZyme
Location: 72108 - 73238 (+)
Gene ID: HRGMv2_2516_11_67
Type: pfam
Location: 73344 - 74426 (+)
Type: pfam
Location: 73344 - 74426 (+)
Gene ID: HRGMv2_2516_11_68
Type: pfam
Location: 74592 - 75671 (+)
Type: pfam
Location: 74592 - 75671 (+)
Gene ID: HRGMv2_2516_11_69
Type: TC
Location: 75722 - 76477 (-)
Type: TC
Location: 75722 - 76477 (-)
Gene ID: HRGMv2_2516_11_70
Type: TC
Location: 76477 - 76767 (-)
Type: TC
Location: 76477 - 76767 (-)
Gene ID: HRGMv2_2516_11_71
Type: TC
Location: 76767 - 77468 (-)
Type: TC
Location: 76767 - 77468 (-)
Gene ID: HRGMv2_2516_11_72
Type: STP
Location: 77452 - 78357 (-)
Type: STP
Location: 77452 - 78357 (-)
Gene ID: HRGMv2_2516_11_73
Type:
Location: 78354 - 78512 (-)
Type:
Location: 78354 - 78512 (-)
Gene ID: HRGMv2_2516_11_74
Type: CAZyme
Location: 78761 - 80230 (-)
Type: CAZyme
Location: 78761 - 80230 (-)
Gene ID: HRGMv2_2516_11_75
Type: CAZyme
Location: 80432 - 81352 (+)
Type: CAZyme
Location: 80432 - 81352 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Schleiferilactobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.