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Cluster: HRGMv2_2488_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2488_8 HRGMv2_2488_8_9 8876 9724 - 4.A.6.1.19
TC HRGMv2_2488_8 HRGMv2_2488_8_10 9721 10536 - 4.A.6.1.19
TC HRGMv2_2488_8 HRGMv2_2488_8_11 10559 11050 - 4.A.6.1.19
pfam HRGMv2_2488_8 HRGMv2_2488_8_12 11076 11501 - EIIA-man
CAZyme HRGMv2_2488_8 HRGMv2_2488_8_13 11517 12650 - CE9
TF HRGMv2_2488_8 HRGMv2_2488_8_14 12785 15331 - TrmB
pfam HRGMv2_2488_8 HRGMv2_2488_8_15 15422 16663 + Sigma54_DBD | Sigma54_CBD
TC HRGMv2_2488_8 HRGMv2_2488_8_16 16911 18128 - 3.A.1.1.27
TF HRGMv2_2488_8 HRGMv2_2488_8_17 18144 19133 - LacI
CAZyme HRGMv2_2488_8 HRGMv2_2488_8_18 19126 21330 - GH31_15
CAZyme HRGMv2_2488_8 HRGMv2_2488_8_19 21541 22980 - GH1
TC HRGMv2_2488_8 HRGMv2_2488_8_20 22980 24914 - 4.A.1.2.11
CAZyme HRGMv2_2488_8 HRGMv2_2488_8_21 24931 26154 - GH13_18
NULL(UNKNOWN) HRGMv2_2488_8 HRGMv2_2488_8_22 26191 26391 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2488_8 HRGMv2_2488_8_23 26555 27502 + LacI
TC HRGMv2_2488_8 HRGMv2_2488_8_24 27624 27977 - 4.A.3.2.2
TC HRGMv2_2488_8 HRGMv2_2488_8_25 27992 28327 - 4.A.3.2.4
CAZyme HRGMv2_2488_8 HRGMv2_2488_8_26 28338 29816 - GH1
NULL(UNKNOWN) HRGMv2_2488_8 HRGMv2_2488_8_27 29832 30794 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2488_8 HRGMv2_2488_8_28 30797 32098 - 4.A.3.2.3
Gene ID: HRGMv2_2488_8_9
Type: TC
Location: 8876 - 9724 (-)
Gene ID: HRGMv2_2488_8_10
Type: TC
Location: 9721 - 10536 (-)
Gene ID: HRGMv2_2488_8_11
Type: TC
Location: 10559 - 11050 (-)
Gene ID: HRGMv2_2488_8_12
Type: pfam
Location: 11076 - 11501 (-)
Gene ID: HRGMv2_2488_8_13
Type: CAZyme
Location: 11517 - 12650 (-)
Gene ID: HRGMv2_2488_8_14
Type: TF
Location: 12785 - 15331 (-)
Gene ID: HRGMv2_2488_8_15
Type: pfam
Location: 15422 - 16663 (+)
Gene ID: HRGMv2_2488_8_16
Type: TC
Location: 16911 - 18128 (-)
Gene ID: HRGMv2_2488_8_17
Type: TF
Location: 18144 - 19133 (-)
Gene ID: HRGMv2_2488_8_18
Type: CAZyme
Location: 19126 - 21330 (-)
Gene ID: HRGMv2_2488_8_19
Type: CAZyme
Location: 21541 - 22980 (-)
Gene ID: HRGMv2_2488_8_20
Type: TC
Location: 22980 - 24914 (-)
Gene ID: HRGMv2_2488_8_21
Type: CAZyme
Location: 24931 - 26154 (-)
Gene ID: HRGMv2_2488_8_22
Type:
Location: 26191 - 26391 (-)
Gene ID: HRGMv2_2488_8_23
Type: TF
Location: 26555 - 27502 (+)
Gene ID: HRGMv2_2488_8_24
Type: TC
Location: 27624 - 27977 (-)
Gene ID: HRGMv2_2488_8_25
Type: TC
Location: 27992 - 28327 (-)
Gene ID: HRGMv2_2488_8_26
Type: CAZyme
Location: 28338 - 29816 (-)
Gene ID: HRGMv2_2488_8_27
Type:
Location: 29832 - 30794 (-)
Gene ID: HRGMv2_2488_8_28
Type: TC
Location: 30797 - 32098 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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