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Cluster: HRGMv2_2456_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2456_3 HRGMv2_2456_3_7 6912 7454 + 4.F.1.1.7
TC HRGMv2_2456_3 HRGMv2_2456_3_8 7467 8297 + 3.A.1.25.6
TC HRGMv2_2456_3 HRGMv2_2456_3_9 8273 9115 + 3.A.1.25.6
TC HRGMv2_2456_3 HRGMv2_2456_3_10 9108 9902 + 3.A.1.25.6
CAZyme HRGMv2_2456_3 HRGMv2_2456_3_11 10203 10775 + CBM50
CAZyme HRGMv2_2456_3 HRGMv2_2456_3_12 10959 11657 + GH23
NULL(UNKNOWN) HRGMv2_2456_3 HRGMv2_2456_3_13 11793 13502 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2456_3 HRGMv2_2456_3_14 13647 14768 + NAD_synthase | tRNA_Me_trans | tRNA_Me_trans_C | tRNA_Me_trans_M
TC HRGMv2_2456_3 HRGMv2_2456_3_15 14788 15399 + 2.A.95.1.3
TC HRGMv2_2456_3 HRGMv2_2456_3_16 15581 17482 + 1.C.39.4.5
Gene ID: HRGMv2_2456_3_7
Type: TC
Location: 6912 - 7454 (+)
Gene ID: HRGMv2_2456_3_8
Type: TC
Location: 7467 - 8297 (+)
Gene ID: HRGMv2_2456_3_9
Type: TC
Location: 8273 - 9115 (+)
Gene ID: HRGMv2_2456_3_10
Type: TC
Location: 9108 - 9902 (+)
Gene ID: HRGMv2_2456_3_11
Type: CAZyme
Location: 10203 - 10775 (+)
Gene ID: HRGMv2_2456_3_12
Type: CAZyme
Location: 10959 - 11657 (+)
Gene ID: HRGMv2_2456_3_13
Type:
Location: 11793 - 13502 (+)
Gene ID: HRGMv2_2456_3_14
Type: pfam
Location: 13647 - 14768 (+)
Gene ID: HRGMv2_2456_3_15
Type: TC
Location: 14788 - 15399 (+)
Gene ID: HRGMv2_2456_3_16
Type: TC
Location: 15581 - 17482 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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