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Cluster: HRGMv2_2446_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2446_16 HRGMv2_2446_16_21 25514 26317 + 3.A.1.104.1
TC HRGMv2_2446_16 HRGMv2_2446_16_22 26328 27152 + 3.A.1.104.2
CAZyme HRGMv2_2446_16 HRGMv2_2446_16_23 27192 28142 + GT2
pfam HRGMv2_2446_16 HRGMv2_2446_16_24 28142 29317 + Glyphos_transf
CAZyme HRGMv2_2446_16 HRGMv2_2446_16_25 29320 30354 + GT2
CAZyme HRGMv2_2446_16 HRGMv2_2446_16_26 30411 32327 + GT2 | GT2
CAZyme HRGMv2_2446_16 HRGMv2_2446_16_27 32410 33510 + GT2
pfam HRGMv2_2446_16 HRGMv2_2446_16_28 33606 34772 + UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme HRGMv2_2446_16 HRGMv2_2446_16_29 34793 36982 + GT2
CAZyme HRGMv2_2446_16 HRGMv2_2446_16_30 37070 38149 + GT2
CAZyme HRGMv2_2446_16 HRGMv2_2446_16_31 38191 39135 + GT2
pfam HRGMv2_2446_16 HRGMv2_2446_16_32 39132 40238 + Acyl_transf_3
NULL(UNKNOWN) HRGMv2_2446_16 HRGMv2_2446_16_33 40278 42032 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2446_16 HRGMv2_2446_16_34 42038 43108 + GT2
pfam HRGMv2_2446_16 HRGMv2_2446_16_35 43220 44320 + FAD_binding_3 | GLF | NAD_binding_8
pfam HRGMv2_2446_16 HRGMv2_2446_16_36 44582 47143 + SASA | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4
TC HRGMv2_2446_16 HRGMv2_2446_16_37 47299 48684 + 9.B.18.1.3
Gene ID: HRGMv2_2446_16_21
Type: TC
Location: 25514 - 26317 (+)
Gene ID: HRGMv2_2446_16_22
Type: TC
Location: 26328 - 27152 (+)
Gene ID: HRGMv2_2446_16_23
Type: CAZyme
Location: 27192 - 28142 (+)
Gene ID: HRGMv2_2446_16_24
Type: pfam
Location: 28142 - 29317 (+)
Gene ID: HRGMv2_2446_16_25
Type: CAZyme
Location: 29320 - 30354 (+)
Gene ID: HRGMv2_2446_16_26
Type: CAZyme
Location: 30411 - 32327 (+)
Gene ID: HRGMv2_2446_16_27
Type: CAZyme
Location: 32410 - 33510 (+)
Gene ID: HRGMv2_2446_16_28
Type: pfam
Location: 33606 - 34772 (+)
Gene ID: HRGMv2_2446_16_29
Type: CAZyme
Location: 34793 - 36982 (+)
Gene ID: HRGMv2_2446_16_30
Type: CAZyme
Location: 37070 - 38149 (+)
Gene ID: HRGMv2_2446_16_31
Type: CAZyme
Location: 38191 - 39135 (+)
Gene ID: HRGMv2_2446_16_32
Type: pfam
Location: 39132 - 40238 (+)
Gene ID: HRGMv2_2446_16_33
Type:
Location: 40278 - 42032 (+)
Gene ID: HRGMv2_2446_16_34
Type: CAZyme
Location: 42038 - 43108 (+)
Gene ID: HRGMv2_2446_16_35
Type: pfam
Location: 43220 - 44320 (+)
Gene ID: HRGMv2_2446_16_36
Type: pfam
Location: 44582 - 47143 (+)
Gene ID: HRGMv2_2446_16_37
Type: TC
Location: 47299 - 48684 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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