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Cluster: HRGMv2_2236_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2236_15 HRGMv2_2236_15_15 16116 16916 + GT2
CAZyme HRGMv2_2236_15 HRGMv2_2236_15_16 16932 18218 + GT4
CAZyme HRGMv2_2236_15 HRGMv2_2236_15_17 18215 19399 + GT4
CAZyme HRGMv2_2236_15 HRGMv2_2236_15_18 19402 20427 + GT2
NULL(UNKNOWN) HRGMv2_2236_15 HRGMv2_2236_15_19 20411 22015 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2236_15 HRGMv2_2236_15_20 22145 23140 + 9.B.18.2.1
STP HRGMv2_2236_15 HRGMv2_2236_15_21 23178 24422 + Aminotran_1_2
CAZyme HRGMv2_2236_15 HRGMv2_2236_15_22 24440 25468 + GT2
Gene ID: HRGMv2_2236_15_15
Type: CAZyme
Location: 16116 - 16916 (+)
Gene ID: HRGMv2_2236_15_16
Type: CAZyme
Location: 16932 - 18218 (+)
Gene ID: HRGMv2_2236_15_17
Type: CAZyme
Location: 18215 - 19399 (+)
Gene ID: HRGMv2_2236_15_18
Type: CAZyme
Location: 19402 - 20427 (+)
Gene ID: HRGMv2_2236_15_19
Type:
Location: 20411 - 22015 (+)
Gene ID: HRGMv2_2236_15_20
Type: TC
Location: 22145 - 23140 (+)
Gene ID: HRGMv2_2236_15_21
Type: STP
Location: 23178 - 24422 (+)
Gene ID: HRGMv2_2236_15_22
Type: CAZyme
Location: 24440 - 25468 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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