Cluster: HRGMv2_2235_CGC25
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2235
- CGC Family ID: CGCFAM_01016
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2235_24 | HRGMv2_2235_24_14 | 12301 | 13497 | - | 2.A.1.15.18 |
| pfam | HRGMv2_2235_24 | HRGMv2_2235_24_15 | 13663 | 13881 | - | DUF6171 |
| CAZyme | HRGMv2_2235_24 | HRGMv2_2235_24_16 | 13934 | 15442 | - | GH51_1 |
| CAZyme | HRGMv2_2235_24 | HRGMv2_2235_24_17 | 15495 | 16805 | - | GH28 |
| CAZyme | HRGMv2_2235_24 | HRGMv2_2235_24_18 | 16852 | 19002 | - | GH112 |
| CAZyme | HRGMv2_2235_24 | HRGMv2_2235_24_19 | 19097 | 20509 | - | CE12 |
| CAZyme | HRGMv2_2235_24 | HRGMv2_2235_24_20 | 20510 | 21562 | - | GH105 |
| NULL(UNKNOWN) | HRGMv2_2235_24 | HRGMv2_2235_24_21 | 21758 | 23482 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2235_24 | HRGMv2_2235_24_22 | 23600 | 24529 | - | 3.A.1.1.29 |
| TC | HRGMv2_2235_24 | HRGMv2_2235_24_23 | 24542 | 25495 | - | 3.A.1.1.29 |
| TF | HRGMv2_2235_24 | HRGMv2_2235_24_24 | 25897 | 26895 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2235_24 | HRGMv2_2235_24_25 | 26922 | 28256 | - | 2.A.66.1.33 |
| TF | HRGMv2_2235_24 | HRGMv2_2235_24_26 | 28480 | 29373 | + | HTH_AraC |
| STP | HRGMv2_2235_24 | HRGMv2_2235_24_27 | 29822 | 30916 | - | GGDEF |
| TC | HRGMv2_2235_24 | HRGMv2_2235_24_28 | 31300 | 33924 | - | 8.A.7.1.5 |
Gene ID: HRGMv2_2235_24_14
Type: TC
Location: 12301 - 13497 (-)
Type: TC
Location: 12301 - 13497 (-)
Gene ID: HRGMv2_2235_24_15
Type: pfam
Location: 13663 - 13881 (-)
Type: pfam
Location: 13663 - 13881 (-)
Gene ID: HRGMv2_2235_24_16
Type: CAZyme
Location: 13934 - 15442 (-)
Type: CAZyme
Location: 13934 - 15442 (-)
Gene ID: HRGMv2_2235_24_17
Type: CAZyme
Location: 15495 - 16805 (-)
Type: CAZyme
Location: 15495 - 16805 (-)
Gene ID: HRGMv2_2235_24_18
Type: CAZyme
Location: 16852 - 19002 (-)
Type: CAZyme
Location: 16852 - 19002 (-)
Gene ID: HRGMv2_2235_24_19
Type: CAZyme
Location: 19097 - 20509 (-)
Type: CAZyme
Location: 19097 - 20509 (-)
Gene ID: HRGMv2_2235_24_20
Type: CAZyme
Location: 20510 - 21562 (-)
Type: CAZyme
Location: 20510 - 21562 (-)
Gene ID: HRGMv2_2235_24_21
Type:
Location: 21758 - 23482 (-)
Type:
Location: 21758 - 23482 (-)
Gene ID: HRGMv2_2235_24_22
Type: TC
Location: 23600 - 24529 (-)
Type: TC
Location: 23600 - 24529 (-)
Gene ID: HRGMv2_2235_24_23
Type: TC
Location: 24542 - 25495 (-)
Type: TC
Location: 24542 - 25495 (-)
Gene ID: HRGMv2_2235_24_24
Type: TF
Location: 25897 - 26895 (+)
Type: TF
Location: 25897 - 26895 (+)
Gene ID: HRGMv2_2235_24_25
Type: TC
Location: 26922 - 28256 (-)
Type: TC
Location: 26922 - 28256 (-)
Gene ID: HRGMv2_2235_24_26
Type: TF
Location: 28480 - 29373 (+)
Type: TF
Location: 28480 - 29373 (+)
Gene ID: HRGMv2_2235_24_27
Type: STP
Location: 29822 - 30916 (-)
Type: STP
Location: 29822 - 30916 (-)
Gene ID: HRGMv2_2235_24_28
Type: TC
Location: 31300 - 33924 (-)
Type: TC
Location: 31300 - 33924 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp900766575
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2235_24_15 | vegetarian > omnivore | 1.58675 | 0.00290 |