Cluster: HRGMv2_2222_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2222
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2222_13 | HRGMv2_2222_13_39 | 42178 | 43242 | + | GT111 |
| NULL(UNKNOWN) | HRGMv2_2222_13 | HRGMv2_2222_13_40 | 43270 | 43509 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_2222_13 | HRGMv2_2222_13_41 | 43653 | 44936 | + | AAA |
| TC | HRGMv2_2222_13 | HRGMv2_2222_13_42 | 44987 | 46966 | + | 3.A.1.121.4 |
| pfam | HRGMv2_2222_13 | HRGMv2_2222_13_43 | 47129 | 47659 | + | Ribosomal_S30AE | Ribosom_S30AE_C |
| NULL(UNKNOWN) | HRGMv2_2222_13 | HRGMv2_2222_13_44 | 47728 | 48477 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2222_13 | HRGMv2_2222_13_45 | 49436 | 50788 | + | 2.A.66.1.33 |
Gene ID: HRGMv2_2222_13_39
Type: CAZyme
Location: 42178 - 43242 (+)
Type: CAZyme
Location: 42178 - 43242 (+)
Gene ID: HRGMv2_2222_13_40
Type:
Location: 43270 - 43509 (+)
Type:
Location: 43270 - 43509 (+)
Gene ID: HRGMv2_2222_13_41
Type: STP
Location: 43653 - 44936 (+)
Type: STP
Location: 43653 - 44936 (+)
Gene ID: HRGMv2_2222_13_42
Type: TC
Location: 44987 - 46966 (+)
Type: TC
Location: 44987 - 46966 (+)
Gene ID: HRGMv2_2222_13_43
Type: pfam
Location: 47129 - 47659 (+)
Type: pfam
Location: 47129 - 47659 (+)
Gene ID: HRGMv2_2222_13_44
Type:
Location: 47728 - 48477 (-)
Type:
Location: 47728 - 48477 (-)
Gene ID: HRGMv2_2222_13_45
Type: TC
Location: 49436 - 50788 (+)
Type: TC
Location: 49436 - 50788 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934307695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.