Cluster: HRGMv2_2189_CGC34
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2189
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2639 | 2924093 | 2925031 | + | 3.A.1.1.10 |
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2640 | 2925048 | 2925944 | + | 3.A.1.1.10 |
| NULL(UNKNOWN) | HRGMv2_2189_1 | HRGMv2_2189_1_2641 | 2925966 | 2927645 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2642 | 2927671 | 2929155 | + | GH32 |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2643 | 2929259 | 2931079 | + | GH13_4 |
| STP | HRGMv2_2189_1 | HRGMv2_2189_1_2644 | 2931135 | 2932106 | + | PfkB |
| pfam | HRGMv2_2189_1 | HRGMv2_2189_1_2645 | 2932222 | 2933445 | - | PFK |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2646 | 2933646 | 2934662 | + | GT2 |
Gene ID: HRGMv2_2189_1_2639
Type: TC
Location: 2924093 - 2925031 (+)
Type: TC
Location: 2924093 - 2925031 (+)
Gene ID: HRGMv2_2189_1_2640
Type: TC
Location: 2925048 - 2925944 (+)
Type: TC
Location: 2925048 - 2925944 (+)
Gene ID: HRGMv2_2189_1_2641
Type:
Location: 2925966 - 2927645 (+)
Type:
Location: 2925966 - 2927645 (+)
Gene ID: HRGMv2_2189_1_2642
Type: CAZyme
Location: 2927671 - 2929155 (+)
Type: CAZyme
Location: 2927671 - 2929155 (+)
Gene ID: HRGMv2_2189_1_2643
Type: CAZyme
Location: 2929259 - 2931079 (+)
Type: CAZyme
Location: 2929259 - 2931079 (+)
Gene ID: HRGMv2_2189_1_2644
Type: STP
Location: 2931135 - 2932106 (+)
Type: STP
Location: 2931135 - 2932106 (+)
Gene ID: HRGMv2_2189_1_2645
Type: pfam
Location: 2932222 - 2933445 (-)
Type: pfam
Location: 2932222 - 2933445 (-)
Gene ID: HRGMv2_2189_1_2646
Type: CAZyme
Location: 2933646 - 2934662 (+)
Type: CAZyme
Location: 2933646 - 2934662 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2189_1_2640 | vegan > omnivore | 1.05530 | 0.03529 |
| HRGMv2_2189_1_2642 | vegan > omnivore | 1.16557 | 0.03529 |
| HRGMv2_2189_1_2644 | vegan > omnivore | 1.40943 | 0.01457 |