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Cluster: HRGMv2_2140_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2140_2 HRGMv2_2140_2_98 117649 118605 + 8.A.59.2.1
TF HRGMv2_2140_2 HRGMv2_2140_2_99 118583 120208 + HTH_AraC | HTH_AraC
TC HRGMv2_2140_2 HRGMv2_2140_2_100 120301 121332 + 3.A.1.2.14
TC HRGMv2_2140_2 HRGMv2_2140_2_101 121453 122994 + 3.A.1.2.14
TC HRGMv2_2140_2 HRGMv2_2140_2_102 122987 123943 + 3.A.1.2.13
TC HRGMv2_2140_2 HRGMv2_2140_2_103 123956 124945 + 3.A.1.2.15
pfam HRGMv2_2140_2 HRGMv2_2140_2_104 124991 126073 + ADH_zinc_N | ADH_N | ADH_zinc_N_2
NULL(UNKNOWN) HRGMv2_2140_2 HRGMv2_2140_2_105 126103 126705 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2140_2 HRGMv2_2140_2_106 126736 128517 + GH2
Gene ID: HRGMv2_2140_2_98
Type: TC
Location: 117649 - 118605 (+)
Gene ID: HRGMv2_2140_2_99
Type: TF
Location: 118583 - 120208 (+)
Gene ID: HRGMv2_2140_2_100
Type: TC
Location: 120301 - 121332 (+)
Gene ID: HRGMv2_2140_2_101
Type: TC
Location: 121453 - 122994 (+)
Gene ID: HRGMv2_2140_2_102
Type: TC
Location: 122987 - 123943 (+)
Gene ID: HRGMv2_2140_2_103
Type: TC
Location: 123956 - 124945 (+)
Gene ID: HRGMv2_2140_2_104
Type: pfam
Location: 124991 - 126073 (+)
Gene ID: HRGMv2_2140_2_105
Type:
Location: 126103 - 126705 (+)
Gene ID: HRGMv2_2140_2_106
Type: CAZyme
Location: 126736 - 128517 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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