Cluster: HRGMv2_2121_CGC26
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2121
- CGC Family ID: CGCFAM_00075
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2121_12 | HRGMv2_2121_12_8 | 7843 | 9291 | + | GH1 |
| TF | HRGMv2_2121_12 | HRGMv2_2121_12_9 | 9350 | 10096 | - | LytTR |
| TC | HRGMv2_2121_12 | HRGMv2_2121_12_10 | 10344 | 12917 | + | 3.A.9.1.2 |
| NULL(UNKNOWN) | HRGMv2_2121_12 | HRGMv2_2121_12_11 | 13090 | 14133 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2121_12 | HRGMv2_2121_12_12 | 14168 | 15124 | + | GT2 |
Gene ID: HRGMv2_2121_12_8
Type: CAZyme
Location: 7843 - 9291 (+)
Type: CAZyme
Location: 7843 - 9291 (+)
Gene ID: HRGMv2_2121_12_9
Type: TF
Location: 9350 - 10096 (-)
Type: TF
Location: 9350 - 10096 (-)
Gene ID: HRGMv2_2121_12_10
Type: TC
Location: 10344 - 12917 (+)
Type: TC
Location: 10344 - 12917 (+)
Gene ID: HRGMv2_2121_12_11
Type:
Location: 13090 - 14133 (+)
Type:
Location: 13090 - 14133 (+)
Gene ID: HRGMv2_2121_12_12
Type: CAZyme
Location: 14168 - 15124 (+)
Type: CAZyme
Location: 14168 - 15124 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp029338615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.