Cluster: HRGMv2_2094_CGC39
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2094
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2094_57 | HRGMv2_2094_57_8 | 7250 | 10135 | - | GT2 |
| TC | HRGMv2_2094_57 | HRGMv2_2094_57_9 | 10158 | 12194 | - | 3.A.1.103.1 |
| TC | HRGMv2_2094_57 | HRGMv2_2094_57_10 | 12293 | 13186 | - | 3.A.1.103.4 |
| NULL(UNKNOWN) | HRGMv2_2094_57 | HRGMv2_2094_57_11 | 13176 | 14594 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2094_57 | HRGMv2_2094_57_12 | 14551 | 15486 | - | GT2 |
| CAZyme | HRGMv2_2094_57 | HRGMv2_2094_57_13 | 15491 | 16648 | - | GT4 |
Gene ID: HRGMv2_2094_57_8
Type: CAZyme
Location: 7250 - 10135 (-)
Type: CAZyme
Location: 7250 - 10135 (-)
Gene ID: HRGMv2_2094_57_9
Type: TC
Location: 10158 - 12194 (-)
Type: TC
Location: 10158 - 12194 (-)
Gene ID: HRGMv2_2094_57_10
Type: TC
Location: 12293 - 13186 (-)
Type: TC
Location: 12293 - 13186 (-)
Gene ID: HRGMv2_2094_57_11
Type:
Location: 13176 - 14594 (-)
Type:
Location: 13176 - 14594 (-)
Gene ID: HRGMv2_2094_57_12
Type: CAZyme
Location: 14551 - 15486 (-)
Type: CAZyme
Location: 14551 - 15486 (-)
Gene ID: HRGMv2_2094_57_13
Type: CAZyme
Location: 15491 - 16648 (-)
Type: CAZyme
Location: 15491 - 16648 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2094_57_9 | vegetarian > vegan | 1.03182 | 0.00114 |