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Cluster: HRGMv2_2087_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2087_14 HRGMv2_2087_14_21 17396 19369 + 8.A.59.4.2
NULL(UNKNOWN) HRGMv2_2087_14 HRGMv2_2087_14_22 19371 20186 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2087_14 HRGMv2_2087_14_23 20208 20534 - HTH_3
CAZyme HRGMv2_2087_14 HRGMv2_2087_14_24 20778 22769 + GT2 | GT4
NULL(UNKNOWN) HRGMv2_2087_14 HRGMv2_2087_14_25 22766 24139 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2087_14 HRGMv2_2087_14_26 24155 25090 + 3.A.1.103.6
pfam HRGMv2_2087_14 HRGMv2_2087_14_27 25172 25597 + fn3 | Interfer-bind
NULL(UNKNOWN) HRGMv2_2087_14 HRGMv2_2087_14_28 25702 27195 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2087_14 HRGMv2_2087_14_29 27192 27953 + 3.A.1.103.6
pfam HRGMv2_2087_14 HRGMv2_2087_14_30 27953 28756 + ABC2_membrane
CAZyme HRGMv2_2087_14 HRGMv2_2087_14_31 28778 31393 + GT2
Gene ID: HRGMv2_2087_14_21
Type: TC
Location: 17396 - 19369 (+)
Gene ID: HRGMv2_2087_14_22
Type:
Location: 19371 - 20186 (+)
Gene ID: HRGMv2_2087_14_23
Type: TF
Location: 20208 - 20534 (-)
Gene ID: HRGMv2_2087_14_24
Type: CAZyme
Location: 20778 - 22769 (+)
Gene ID: HRGMv2_2087_14_25
Type:
Location: 22766 - 24139 (+)
Gene ID: HRGMv2_2087_14_26
Type: TC
Location: 24155 - 25090 (+)
Gene ID: HRGMv2_2087_14_27
Type: pfam
Location: 25172 - 25597 (+)
Gene ID: HRGMv2_2087_14_28
Type:
Location: 25702 - 27195 (+)
Gene ID: HRGMv2_2087_14_29
Type: TC
Location: 27192 - 27953 (+)
Gene ID: HRGMv2_2087_14_30
Type: pfam
Location: 27953 - 28756 (+)
Gene ID: HRGMv2_2087_14_31
Type: CAZyme
Location: 28778 - 31393 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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