Cluster: HRGMv2_2087_CGC29
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2087
- CGC Family ID: CGCFAM_02586
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2087_12 | HRGMv2_2087_12_72 | 75223 | 75993 | + | 8.A.3.2.2 |
| pfam | HRGMv2_2087_12 | HRGMv2_2087_12_73 | 76050 | 76601 | + | LRR_5 |
| TC | HRGMv2_2087_12 | HRGMv2_2087_12_74 | 76717 | 78177 | + | 9.B.18.1.2 |
| TC | HRGMv2_2087_12 | HRGMv2_2087_12_75 | 78188 | 79243 | + | 9.B.97.1.2 |
| CAZyme | HRGMv2_2087_12 | HRGMv2_2087_12_76 | 79259 | 80077 | + | GT111 |
| NULL(UNKNOWN) | HRGMv2_2087_12 | HRGMv2_2087_12_77 | 80061 | 81254 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2087_12 | HRGMv2_2087_12_78 | 81251 | 81907 | + | Hydrolase | Hydrolase_like | HAD_2 |
| CAZyme | HRGMv2_2087_12 | HRGMv2_2087_12_79 | 81904 | 83025 | + | GT4 |
| CAZyme | HRGMv2_2087_12 | HRGMv2_2087_12_80 | 83036 | 83806 | + | GT111 |
| pfam | HRGMv2_2087_12 | HRGMv2_2087_12_81 | 83803 | 84927 | + | EpsG |
| CAZyme | HRGMv2_2087_12 | HRGMv2_2087_12_82 | 84981 | 85880 | + | GT2 |
| TC | HRGMv2_2087_12 | HRGMv2_2087_12_83 | 85890 | 87353 | + | 2.A.66.2.16 |
Gene ID: HRGMv2_2087_12_72
Type: TC
Location: 75223 - 75993 (+)
Type: TC
Location: 75223 - 75993 (+)
Gene ID: HRGMv2_2087_12_73
Type: pfam
Location: 76050 - 76601 (+)
Type: pfam
Location: 76050 - 76601 (+)
Gene ID: HRGMv2_2087_12_74
Type: TC
Location: 76717 - 78177 (+)
Type: TC
Location: 76717 - 78177 (+)
Gene ID: HRGMv2_2087_12_75
Type: TC
Location: 78188 - 79243 (+)
Type: TC
Location: 78188 - 79243 (+)
Gene ID: HRGMv2_2087_12_76
Type: CAZyme
Location: 79259 - 80077 (+)
Type: CAZyme
Location: 79259 - 80077 (+)
Gene ID: HRGMv2_2087_12_77
Type:
Location: 80061 - 81254 (+)
Type:
Location: 80061 - 81254 (+)
Gene ID: HRGMv2_2087_12_78
Type: pfam
Location: 81251 - 81907 (+)
Type: pfam
Location: 81251 - 81907 (+)
Gene ID: HRGMv2_2087_12_79
Type: CAZyme
Location: 81904 - 83025 (+)
Type: CAZyme
Location: 81904 - 83025 (+)
Gene ID: HRGMv2_2087_12_80
Type: CAZyme
Location: 83036 - 83806 (+)
Type: CAZyme
Location: 83036 - 83806 (+)
Gene ID: HRGMv2_2087_12_81
Type: pfam
Location: 83803 - 84927 (+)
Type: pfam
Location: 83803 - 84927 (+)
Gene ID: HRGMv2_2087_12_82
Type: CAZyme
Location: 84981 - 85880 (+)
Type: CAZyme
Location: 84981 - 85880 (+)
Gene ID: HRGMv2_2087_12_83
Type: TC
Location: 85890 - 87353 (+)
Type: TC
Location: 85890 - 87353 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.