Cluster: HRGMv2_2087_CGC27
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2087
- CGC Family ID: CGCFAM_00047
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2087_12 | HRGMv2_2087_12_2 | 980 | 3424 | - | GH94 |
| TF | HRGMv2_2087_12 | HRGMv2_2087_12_3 | 3905 | 4927 | + | LacI |
| NULL(UNKNOWN) | HRGMv2_2087_12 | HRGMv2_2087_12_4 | 4991 | 6400 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2087_12 | HRGMv2_2087_12_5 | 6535 | 7452 | + | 3.A.1.1.4 |
| TC | HRGMv2_2087_12 | HRGMv2_2087_12_6 | 7458 | 8324 | + | 3.A.1.1.13 |
Gene ID: HRGMv2_2087_12_2
Type: CAZyme
Location: 980 - 3424 (-)
Type: CAZyme
Location: 980 - 3424 (-)
Gene ID: HRGMv2_2087_12_3
Type: TF
Location: 3905 - 4927 (+)
Type: TF
Location: 3905 - 4927 (+)
Gene ID: HRGMv2_2087_12_4
Type:
Location: 4991 - 6400 (+)
Type:
Location: 4991 - 6400 (+)
Gene ID: HRGMv2_2087_12_5
Type: TC
Location: 6535 - 7452 (+)
Type: TC
Location: 6535 - 7452 (+)
Gene ID: HRGMv2_2087_12_6
Type: TC
Location: 7458 - 8324 (+)
Type: TC
Location: 7458 - 8324 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.