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Cluster: HRGMv2_2075_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2075_26 HRGMv2_2075_26_18 17783 18007 - 3.D.1.6.4
pfam HRGMv2_2075_26 HRGMv2_2075_26_19 18488 18727 - zf-like
NULL(UNKNOWN) HRGMv2_2075_26 HRGMv2_2075_26_20 18845 19006 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2075_26 HRGMv2_2075_26_21 19236 20102 - 3.A.1.1.48
TC HRGMv2_2075_26 HRGMv2_2075_26_22 20115 21029 - 3.A.1.1.4
NULL(UNKNOWN) HRGMv2_2075_26 HRGMv2_2075_26_23 21263 22672 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2075_26 HRGMv2_2075_26_24 22773 23795 - LacI
CAZyme HRGMv2_2075_26 HRGMv2_2075_26_25 24288 26723 + GH94
TC HRGMv2_2075_26 HRGMv2_2075_26_26 26991 28205 - 2.A.36.2.1
pfam HRGMv2_2075_26 HRGMv2_2075_26_27 28409 29326 - DUF3298 | PdaC
CAZyme HRGMv2_2075_26 HRGMv2_2075_26_28 29753 34285 - PL9_1
pfam HRGMv2_2075_26 HRGMv2_2075_26_29 34664 35407 - Radical_SAM | Fer4_12
TF HRGMv2_2075_26 HRGMv2_2075_26_30 35450 36484 - LacI
CAZyme HRGMv2_2075_26 HRGMv2_2075_26_31 36514 38007 - GH77
TC HRGMv2_2075_26 HRGMv2_2075_26_32 38038 38877 - 3.A.1.1.45
TC HRGMv2_2075_26 HRGMv2_2075_26_33 38877 39719 - 3.A.1.1.45
TC HRGMv2_2075_26 HRGMv2_2075_26_34 39826 41040 - 3.A.1.1.45
Gene ID: HRGMv2_2075_26_18
Type: TC
Location: 17783 - 18007 (-)
Gene ID: HRGMv2_2075_26_19
Type: pfam
Location: 18488 - 18727 (-)
Gene ID: HRGMv2_2075_26_20
Type:
Location: 18845 - 19006 (-)
Gene ID: HRGMv2_2075_26_21
Type: TC
Location: 19236 - 20102 (-)
Gene ID: HRGMv2_2075_26_22
Type: TC
Location: 20115 - 21029 (-)
Gene ID: HRGMv2_2075_26_23
Type:
Location: 21263 - 22672 (-)
Gene ID: HRGMv2_2075_26_24
Type: TF
Location: 22773 - 23795 (-)
Gene ID: HRGMv2_2075_26_25
Type: CAZyme
Location: 24288 - 26723 (+)
Gene ID: HRGMv2_2075_26_26
Type: TC
Location: 26991 - 28205 (-)
Gene ID: HRGMv2_2075_26_27
Type: pfam
Location: 28409 - 29326 (-)
Gene ID: HRGMv2_2075_26_28
Type: CAZyme
Location: 29753 - 34285 (-)
Gene ID: HRGMv2_2075_26_29
Type: pfam
Location: 34664 - 35407 (-)
Gene ID: HRGMv2_2075_26_30
Type: TF
Location: 35450 - 36484 (-)
Gene ID: HRGMv2_2075_26_31
Type: CAZyme
Location: 36514 - 38007 (-)
Gene ID: HRGMv2_2075_26_32
Type: TC
Location: 38038 - 38877 (-)
Gene ID: HRGMv2_2075_26_33
Type: TC
Location: 38877 - 39719 (-)
Gene ID: HRGMv2_2075_26_34
Type: TC
Location: 39826 - 41040 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2075_26_27 vegetarian > vegan 1.03157 0.00229
HRGMv2_2075_26_28 vegetarian > vegan 1.12681 0.00229

🧭 Explore Read Mapping of CGC

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