Cluster: HRGMv2_2037_CGC9
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2037
- CGC Family ID: CGCFAM_00009
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2037_3 | HRGMv2_2037_3_36 | 39713 | 40510 | + | 3.A.1.104.1 |
| TC | HRGMv2_2037_3 | HRGMv2_2037_3_37 | 40531 | 41790 | + | 3.A.1.103.6 |
| pfam | HRGMv2_2037_3 | HRGMv2_2037_3_38 | 41805 | 42731 | + | RrnaAD | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 |
| NULL(UNKNOWN) | HRGMv2_2037_3 | HRGMv2_2037_3_39 | 42728 | 43975 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2037_3 | HRGMv2_2037_3_40 | 43972 | 46506 | + | GT2 | GT2 |
| CAZyme | HRGMv2_2037_3 | HRGMv2_2037_3_41 | 46503 | 48947 | + | GT2 | GT2 |
| pfam | HRGMv2_2037_3 | HRGMv2_2037_3_42 | 48976 | 51318 | + | YfhO | YfhO |
| STP | HRGMv2_2037_3 | HRGMv2_2037_3_43 | 51315 | 52442 | + | Aminotran_1_2 |
| CAZyme | HRGMv2_2037_3 | HRGMv2_2037_3_44 | 52435 | 54249 | + | GT2 | GT2 |
| CAZyme | HRGMv2_2037_3 | HRGMv2_2037_3_45 | 54310 | 55266 | + | GT2 |
| TC | HRGMv2_2037_3 | HRGMv2_2037_3_46 | 55372 | 56775 | + | 9.B.18.1.1 |
| pfam | HRGMv2_2037_3 | HRGMv2_2037_3_47 | 57205 | 58365 | + | LytR_cpsA_psr |
| CAZyme | HRGMv2_2037_3 | HRGMv2_2037_3_48 | 58368 | 59300 | + | GT2 |
Gene ID: HRGMv2_2037_3_36
Type: TC
Location: 39713 - 40510 (+)
Type: TC
Location: 39713 - 40510 (+)
Gene ID: HRGMv2_2037_3_37
Type: TC
Location: 40531 - 41790 (+)
Type: TC
Location: 40531 - 41790 (+)
Gene ID: HRGMv2_2037_3_38
Type: pfam
Location: 41805 - 42731 (+)
Type: pfam
Location: 41805 - 42731 (+)
Gene ID: HRGMv2_2037_3_39
Type:
Location: 42728 - 43975 (+)
Type:
Location: 42728 - 43975 (+)
Gene ID: HRGMv2_2037_3_40
Type: CAZyme
Location: 43972 - 46506 (+)
Type: CAZyme
Location: 43972 - 46506 (+)
Gene ID: HRGMv2_2037_3_41
Type: CAZyme
Location: 46503 - 48947 (+)
Type: CAZyme
Location: 46503 - 48947 (+)
Gene ID: HRGMv2_2037_3_42
Type: pfam
Location: 48976 - 51318 (+)
Type: pfam
Location: 48976 - 51318 (+)
Gene ID: HRGMv2_2037_3_43
Type: STP
Location: 51315 - 52442 (+)
Type: STP
Location: 51315 - 52442 (+)
Gene ID: HRGMv2_2037_3_44
Type: CAZyme
Location: 52435 - 54249 (+)
Type: CAZyme
Location: 52435 - 54249 (+)
Gene ID: HRGMv2_2037_3_45
Type: CAZyme
Location: 54310 - 55266 (+)
Type: CAZyme
Location: 54310 - 55266 (+)
Gene ID: HRGMv2_2037_3_46
Type: TC
Location: 55372 - 56775 (+)
Type: TC
Location: 55372 - 56775 (+)
Gene ID: HRGMv2_2037_3_47
Type: pfam
Location: 57205 - 58365 (+)
Type: pfam
Location: 57205 - 58365 (+)
Gene ID: HRGMv2_2037_3_48
Type: CAZyme
Location: 58368 - 59300 (+)
Type: CAZyme
Location: 58368 - 59300 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens sp905214955
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.