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Cluster: HRGMv2_1913_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1913_14 HRGMv2_1913_14_1 253 2130 + 9.B.18.2.1
pfam HRGMv2_1913_14 HRGMv2_1913_14_2 2127 3347 + Aminotran_1_2 | DegT_DnrJ_EryC1
TC HRGMv2_1913_14 HRGMv2_1913_14_3 3348 4073 + 9.B.18.1.3
CAZyme HRGMv2_1913_14 HRGMv2_1913_14_4 4057 4836 + GT2
pfam HRGMv2_1913_14 HRGMv2_1913_14_5 4901 6064 + UDPG_MGDP_dh | UDPG_MGDP_dh_N
NULL(UNKNOWN) HRGMv2_1913_14 HRGMv2_1913_14_6 6051 6854 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1913_14 HRGMv2_1913_14_7 6829 7794 + GT2
NULL(UNKNOWN) HRGMv2_1913_14 HRGMv2_1913_14_8 7788 9062 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1913_14 HRGMv2_1913_14_9 9098 10063 + GT2
CAZyme HRGMv2_1913_14 HRGMv2_1913_14_10 10083 10979 + GT2
TC HRGMv2_1913_14 HRGMv2_1913_14_11 10997 12451 + 2.A.66.2.16
Gene ID: HRGMv2_1913_14_1
Type: TC
Location: 253 - 2130 (+)
Gene ID: HRGMv2_1913_14_2
Type: pfam
Location: 2127 - 3347 (+)
Gene ID: HRGMv2_1913_14_3
Type: TC
Location: 3348 - 4073 (+)
Gene ID: HRGMv2_1913_14_4
Type: CAZyme
Location: 4057 - 4836 (+)
Gene ID: HRGMv2_1913_14_5
Type: pfam
Location: 4901 - 6064 (+)
Gene ID: HRGMv2_1913_14_6
Type:
Location: 6051 - 6854 (+)
Gene ID: HRGMv2_1913_14_7
Type: CAZyme
Location: 6829 - 7794 (+)
Gene ID: HRGMv2_1913_14_8
Type:
Location: 7788 - 9062 (+)
Gene ID: HRGMv2_1913_14_9
Type: CAZyme
Location: 9098 - 10063 (+)
Gene ID: HRGMv2_1913_14_10
Type: CAZyme
Location: 10083 - 10979 (+)
Gene ID: HRGMv2_1913_14_11
Type: TC
Location: 10997 - 12451 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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