Cluster: HRGMv2_1814_CGC35
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1814
- CGC Family ID: CGCFAM_00695
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1814_21 | HRGMv2_1814_21_14 | 15985 | 16731 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_1814_21 | HRGMv2_1814_21_15 | 16744 | 17964 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1814_21 | HRGMv2_1814_21_16 | 17939 | 19156 | - | GT4 |
| pfam | HRGMv2_1814_21 | HRGMv2_1814_21_17 | 19153 | 19641 | - | Hexapep |
| CAZyme | HRGMv2_1814_21 | HRGMv2_1814_21_18 | 19644 | 20486 | - | GT2 |
| TC | HRGMv2_1814_21 | HRGMv2_1814_21_19 | 20601 | 22763 | - | 8.A.3.3.2 |
| pfam | HRGMv2_1814_21 | HRGMv2_1814_21_20 | 22766 | 23209 | - | LMWPc |
| TC | HRGMv2_1814_21 | HRGMv2_1814_21_21 | 23215 | 24354 | - | 1.B.18.3.1 |
| NULL(UNKNOWN) | HRGMv2_1814_21 | HRGMv2_1814_21_22 | 24816 | 24947 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1814_21 | HRGMv2_1814_21_23 | 25046 | 26629 | + | 2.A.109.2.3 |
| TC | HRGMv2_1814_21 | HRGMv2_1814_21_24 | 26801 | 28654 | - | 9.B.22.2.1 |
| pfam | HRGMv2_1814_21 | HRGMv2_1814_21_25 | 28676 | 29257 | - | DCD_N | DCD |
| pfam | HRGMv2_1814_21 | HRGMv2_1814_21_26 | 29349 | 29990 | - | PRK |
| TC | HRGMv2_1814_21 | HRGMv2_1814_21_27 | 30318 | 33647 | + | 9.B.34.1.1 |
| STP | HRGMv2_1814_21 | HRGMv2_1814_21_28 | 33615 | 34484 | - | AlkA_N | HhH-GPD |
| pfam | HRGMv2_1814_21 | HRGMv2_1814_21_29 | 34620 | 35972 | + | HSP70 |
| TC | HRGMv2_1814_21 | HRGMv2_1814_21_30 | 36050 | 37351 | + | 8.A.1.6.2 |
| TC | HRGMv2_1814_21 | HRGMv2_1814_21_31 | 37351 | 40473 | + | 2.A.6.2.12 |
| TC | HRGMv2_1814_21 | HRGMv2_1814_21_32 | 40474 | 43560 | + | 2.A.6.2.12 |
| TC | HRGMv2_1814_21 | HRGMv2_1814_21_33 | 43557 | 44972 | + | 2.A.1.3.26 |
Gene ID: HRGMv2_1814_21_14
Type: CAZyme
Location: 15985 - 16731 (-)
Type: CAZyme
Location: 15985 - 16731 (-)
Gene ID: HRGMv2_1814_21_15
Type:
Location: 16744 - 17964 (-)
Type:
Location: 16744 - 17964 (-)
Gene ID: HRGMv2_1814_21_16
Type: CAZyme
Location: 17939 - 19156 (-)
Type: CAZyme
Location: 17939 - 19156 (-)
Gene ID: HRGMv2_1814_21_17
Type: pfam
Location: 19153 - 19641 (-)
Type: pfam
Location: 19153 - 19641 (-)
Gene ID: HRGMv2_1814_21_18
Type: CAZyme
Location: 19644 - 20486 (-)
Type: CAZyme
Location: 19644 - 20486 (-)
Gene ID: HRGMv2_1814_21_19
Type: TC
Location: 20601 - 22763 (-)
Type: TC
Location: 20601 - 22763 (-)
Gene ID: HRGMv2_1814_21_20
Type: pfam
Location: 22766 - 23209 (-)
Type: pfam
Location: 22766 - 23209 (-)
Gene ID: HRGMv2_1814_21_21
Type: TC
Location: 23215 - 24354 (-)
Type: TC
Location: 23215 - 24354 (-)
Gene ID: HRGMv2_1814_21_22
Type:
Location: 24816 - 24947 (+)
Type:
Location: 24816 - 24947 (+)
Gene ID: HRGMv2_1814_21_23
Type: TC
Location: 25046 - 26629 (+)
Type: TC
Location: 25046 - 26629 (+)
Gene ID: HRGMv2_1814_21_24
Type: TC
Location: 26801 - 28654 (-)
Type: TC
Location: 26801 - 28654 (-)
Gene ID: HRGMv2_1814_21_25
Type: pfam
Location: 28676 - 29257 (-)
Type: pfam
Location: 28676 - 29257 (-)
Gene ID: HRGMv2_1814_21_26
Type: pfam
Location: 29349 - 29990 (-)
Type: pfam
Location: 29349 - 29990 (-)
Gene ID: HRGMv2_1814_21_27
Type: TC
Location: 30318 - 33647 (+)
Type: TC
Location: 30318 - 33647 (+)
Gene ID: HRGMv2_1814_21_28
Type: STP
Location: 33615 - 34484 (-)
Type: STP
Location: 33615 - 34484 (-)
Gene ID: HRGMv2_1814_21_29
Type: pfam
Location: 34620 - 35972 (+)
Type: pfam
Location: 34620 - 35972 (+)
Gene ID: HRGMv2_1814_21_30
Type: TC
Location: 36050 - 37351 (+)
Type: TC
Location: 36050 - 37351 (+)
Gene ID: HRGMv2_1814_21_31
Type: TC
Location: 37351 - 40473 (+)
Type: TC
Location: 37351 - 40473 (+)
Gene ID: HRGMv2_1814_21_32
Type: TC
Location: 40474 - 43560 (+)
Type: TC
Location: 40474 - 43560 (+)
Gene ID: HRGMv2_1814_21_33
Type: TC
Location: 43557 - 44972 (+)
Type: TC
Location: 43557 - 44972 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_B
Species
Citrobacter_B koseri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.