Cluster: HRGMv2_1504_CGC19
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_1504
- CGC Family ID: CGCFAM_00006
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1504_30 | HRGMv2_1504_30_12 | 11003 | 11716 | + | 9.B.18.1.2 |
| CAZyme | HRGMv2_1504_30 | HRGMv2_1504_30_13 | 11703 | 12509 | + | GT26 |
| pfam | HRGMv2_1504_30 | HRGMv2_1504_30_14 | 12502 | 13602 | + | Epimerase_2 |
| pfam | HRGMv2_1504_30 | HRGMv2_1504_30_15 | 13607 | 14041 | + | Hexapep | Hexapep_2 |
| CAZyme | HRGMv2_1504_30 | HRGMv2_1504_30_16 | 14038 | 15117 | + | GT4 |
| pfam | HRGMv2_1504_30 | HRGMv2_1504_30_17 | 15114 | 15635 | + | Hexapep | Hexapep_2 |
| CAZyme | HRGMv2_1504_30 | HRGMv2_1504_30_18 | 15632 | 16396 | + | GT32 |
| CAZyme | HRGMv2_1504_30 | HRGMv2_1504_30_19 | 16393 | 17307 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_1504_30 | HRGMv2_1504_30_20 | 17304 | 18530 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1504_30 | HRGMv2_1504_30_21 | 18602 | 19552 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_1504_30 | HRGMv2_1504_30_22 | 19545 | 20447 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1504_30 | HRGMv2_1504_30_23 | 20464 | 21897 | + | 2.A.66.2.23 |
Gene ID: HRGMv2_1504_30_12
Type: TC
Location: 11003 - 11716 (+)
Type: TC
Location: 11003 - 11716 (+)
Gene ID: HRGMv2_1504_30_13
Type: CAZyme
Location: 11703 - 12509 (+)
Type: CAZyme
Location: 11703 - 12509 (+)
Gene ID: HRGMv2_1504_30_14
Type: pfam
Location: 12502 - 13602 (+)
Type: pfam
Location: 12502 - 13602 (+)
Gene ID: HRGMv2_1504_30_15
Type: pfam
Location: 13607 - 14041 (+)
Type: pfam
Location: 13607 - 14041 (+)
Gene ID: HRGMv2_1504_30_16
Type: CAZyme
Location: 14038 - 15117 (+)
Type: CAZyme
Location: 14038 - 15117 (+)
Gene ID: HRGMv2_1504_30_17
Type: pfam
Location: 15114 - 15635 (+)
Type: pfam
Location: 15114 - 15635 (+)
Gene ID: HRGMv2_1504_30_18
Type: CAZyme
Location: 15632 - 16396 (+)
Type: CAZyme
Location: 15632 - 16396 (+)
Gene ID: HRGMv2_1504_30_19
Type: CAZyme
Location: 16393 - 17307 (+)
Type: CAZyme
Location: 16393 - 17307 (+)
Gene ID: HRGMv2_1504_30_20
Type:
Location: 17304 - 18530 (+)
Type:
Location: 17304 - 18530 (+)
Gene ID: HRGMv2_1504_30_21
Type: CAZyme
Location: 18602 - 19552 (+)
Type: CAZyme
Location: 18602 - 19552 (+)
Gene ID: HRGMv2_1504_30_22
Type:
Location: 19545 - 20447 (+)
Type:
Location: 19545 - 20447 (+)
Gene ID: HRGMv2_1504_30_23
Type: TC
Location: 20464 - 21897 (+)
Type: TC
Location: 20464 - 21897 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.