Cluster: HRGMv2_0611_CGC10
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0611
- CGC Family ID: CGCFAM_00568
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0611_4 | HRGMv2_0611_4_133 | 156430 | 157545 | - | 1.A.23.4.3 |
| NULL(UNKNOWN) | HRGMv2_0611_4 | HRGMv2_0611_4_134 | 157812 | 158348 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0611_4 | HRGMv2_0611_4_135 | 158432 | 158911 | - | 1.A.29.1.5 |
| pfam | HRGMv2_0611_4 | HRGMv2_0611_4_136 | 158982 | 159317 | - | Zn_ribbon_8 |
| STP | HRGMv2_0611_4 | HRGMv2_0611_4_137 | 159387 | 160616 | - | FmdA_AmdA |
| TC | HRGMv2_0611_4 | HRGMv2_0611_4_138 | 161031 | 162419 | - | 9.B.145.1.2 |
| NULL(UNKNOWN) | HRGMv2_0611_4 | HRGMv2_0611_4_139 | 162635 | 163573 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0611_4 | HRGMv2_0611_4_140 | 163943 | 165352 | + | 1.I.1.1.3 |
| pfam | HRGMv2_0611_4 | HRGMv2_0611_4_141 | 165414 | 168875 | + | tRNA_anti-codon | PHP | DNA_pol3_alpha | HHH_6 | DNA_pol3_finger |
| CAZyme | HRGMv2_0611_4 | HRGMv2_0611_4_142 | 168881 | 169525 | - | GT2 |
| TC | HRGMv2_0611_4 | HRGMv2_0611_4_143 | 169890 | 171641 | + | 3.A.1.106.1 |
| CAZyme | HRGMv2_0611_4 | HRGMv2_0611_4_144 | 171638 | 172678 | + | GT9 |
| CAZyme | HRGMv2_0611_4 | HRGMv2_0611_4_145 | 172729 | 173496 | + | GT2 |
| CAZyme | HRGMv2_0611_4 | HRGMv2_0611_4_146 | 173489 | 174541 | + | GT4 |
| CAZyme | HRGMv2_0611_4 | HRGMv2_0611_4_147 | 174538 | 175359 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_0611_4 | HRGMv2_0611_4_148 | 175526 | 176776 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0611_4 | HRGMv2_0611_4_149 | 176893 | 177816 | + | GT8 |
Gene ID: HRGMv2_0611_4_133
Type: TC
Location: 156430 - 157545 (-)
Type: TC
Location: 156430 - 157545 (-)
Gene ID: HRGMv2_0611_4_134
Type:
Location: 157812 - 158348 (+)
Type:
Location: 157812 - 158348 (+)
Gene ID: HRGMv2_0611_4_135
Type: TC
Location: 158432 - 158911 (-)
Type: TC
Location: 158432 - 158911 (-)
Gene ID: HRGMv2_0611_4_136
Type: pfam
Location: 158982 - 159317 (-)
Type: pfam
Location: 158982 - 159317 (-)
Gene ID: HRGMv2_0611_4_137
Type: STP
Location: 159387 - 160616 (-)
Type: STP
Location: 159387 - 160616 (-)
Gene ID: HRGMv2_0611_4_138
Type: TC
Location: 161031 - 162419 (-)
Type: TC
Location: 161031 - 162419 (-)
Gene ID: HRGMv2_0611_4_139
Type:
Location: 162635 - 163573 (-)
Type:
Location: 162635 - 163573 (-)
Gene ID: HRGMv2_0611_4_140
Type: TC
Location: 163943 - 165352 (+)
Type: TC
Location: 163943 - 165352 (+)
Gene ID: HRGMv2_0611_4_141
Type: pfam
Location: 165414 - 168875 (+)
Type: pfam
Location: 165414 - 168875 (+)
Gene ID: HRGMv2_0611_4_142
Type: CAZyme
Location: 168881 - 169525 (-)
Type: CAZyme
Location: 168881 - 169525 (-)
Gene ID: HRGMv2_0611_4_143
Type: TC
Location: 169890 - 171641 (+)
Type: TC
Location: 169890 - 171641 (+)
Gene ID: HRGMv2_0611_4_144
Type: CAZyme
Location: 171638 - 172678 (+)
Type: CAZyme
Location: 171638 - 172678 (+)
Gene ID: HRGMv2_0611_4_145
Type: CAZyme
Location: 172729 - 173496 (+)
Type: CAZyme
Location: 172729 - 173496 (+)
Gene ID: HRGMv2_0611_4_146
Type: CAZyme
Location: 173489 - 174541 (+)
Type: CAZyme
Location: 173489 - 174541 (+)
Gene ID: HRGMv2_0611_4_147
Type: CAZyme
Location: 174538 - 175359 (+)
Type: CAZyme
Location: 174538 - 175359 (+)
Gene ID: HRGMv2_0611_4_148
Type:
Location: 175526 - 176776 (+)
Type:
Location: 175526 - 176776 (+)
Gene ID: HRGMv2_0611_4_149
Type: CAZyme
Location: 176893 - 177816 (+)
Type: CAZyme
Location: 176893 - 177816 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oxalobacter
Species
Oxalobacter formigenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.