Cluster: HRGMv2_0542_CGC6
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0542
- CGC Family ID: CGCFAM_00007
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0542_12 | HRGMv2_0542_12_7 | 9357 | 10550 | + | GT4 |
| pfam | HRGMv2_0542_12 | HRGMv2_0542_12_8 | 10531 | 11151 | + | Hexapep | Hexapep_2 |
| CAZyme | HRGMv2_0542_12 | HRGMv2_0542_12_9 | 11141 | 11881 | + | GT2 |
| CAZyme | HRGMv2_0542_12 | HRGMv2_0542_12_10 | 11878 | 12813 | + | GT8 |
| NULL(UNKNOWN) | HRGMv2_0542_12 | HRGMv2_0542_12_11 | 12816 | 14549 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0542_12 | HRGMv2_0542_12_12 | 14639 | 15688 | + | GT4 |
| CAZyme | HRGMv2_0542_12 | HRGMv2_0542_12_13 | 15703 | 16830 | + | GT4 |
| CAZyme | HRGMv2_0542_12 | HRGMv2_0542_12_14 | 17072 | 17965 | + | GT2 |
| pfam | HRGMv2_0542_12 | HRGMv2_0542_12_15 | 18005 | 19258 | - | UDPG_MGDP_dh | NAD_Gly3P_dh_N | 3HCDH_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| TC | HRGMv2_0542_12 | HRGMv2_0542_12_16 | 19399 | 20028 | + | 9.B.18.1.3 |
| TC | HRGMv2_0542_12 | HRGMv2_0542_12_17 | 20069 | 20737 | + | 9.B.18.1.3 |
Gene ID: HRGMv2_0542_12_7
Type: CAZyme
Location: 9357 - 10550 (+)
Type: CAZyme
Location: 9357 - 10550 (+)
Gene ID: HRGMv2_0542_12_8
Type: pfam
Location: 10531 - 11151 (+)
Type: pfam
Location: 10531 - 11151 (+)
Gene ID: HRGMv2_0542_12_9
Type: CAZyme
Location: 11141 - 11881 (+)
Type: CAZyme
Location: 11141 - 11881 (+)
Gene ID: HRGMv2_0542_12_10
Type: CAZyme
Location: 11878 - 12813 (+)
Type: CAZyme
Location: 11878 - 12813 (+)
Gene ID: HRGMv2_0542_12_11
Type:
Location: 12816 - 14549 (+)
Type:
Location: 12816 - 14549 (+)
Gene ID: HRGMv2_0542_12_12
Type: CAZyme
Location: 14639 - 15688 (+)
Type: CAZyme
Location: 14639 - 15688 (+)
Gene ID: HRGMv2_0542_12_13
Type: CAZyme
Location: 15703 - 16830 (+)
Type: CAZyme
Location: 15703 - 16830 (+)
Gene ID: HRGMv2_0542_12_14
Type: CAZyme
Location: 17072 - 17965 (+)
Type: CAZyme
Location: 17072 - 17965 (+)
Gene ID: HRGMv2_0542_12_15
Type: pfam
Location: 18005 - 19258 (-)
Type: pfam
Location: 18005 - 19258 (-)
Gene ID: HRGMv2_0542_12_16
Type: TC
Location: 19399 - 20028 (+)
Type: TC
Location: 19399 - 20028 (+)
Gene ID: HRGMv2_0542_12_17
Type: TC
Location: 20069 - 20737 (+)
Type: TC
Location: 20069 - 20737 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.