Cluster: HRGMv2_0429_CGC8
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_0429
- CGC Family ID: CGCFAM_09541
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0429_2 | HRGMv2_0429_2_124 | 134932 | 135234 | + | 1.B.14.6.1 |
| TC | HRGMv2_0429_2 | HRGMv2_0429_2_125 | 135278 | 138205 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0429_2 | HRGMv2_0429_2_126 | 138228 | 140159 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | HRGMv2_0429_2 | HRGMv2_0429_2_127 | 140247 | 140387 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0429_2 | HRGMv2_0429_2_128 | 140393 | 142990 | + | GH3 |
| CAZyme | HRGMv2_0429_2 | HRGMv2_0429_2_129 | 142980 | 145499 | + | GH43_2 | GH8 |
| NULL(UNKNOWN) | HRGMv2_0429_2 | HRGMv2_0429_2_130 | 145518 | 146222 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0429_2 | HRGMv2_0429_2_131 | 146231 | 147679 | + | GH43_7 |
| CAZyme | HRGMv2_0429_2 | HRGMv2_0429_2_132 | 147708 | 149660 | + | GH97 |
| CAZyme | HRGMv2_0429_2 | HRGMv2_0429_2_133 | 149688 | 152165 | + | GH31_4 |
| CAZyme | HRGMv2_0429_2 | HRGMv2_0429_2_134 | 152181 | 154565 | + | GH146 |
| CAZyme | HRGMv2_0429_2 | HRGMv2_0429_2_135 | 154600 | 157560 | + | CBM6 | CBM91 | GH43_10 | GH43_29 |
| CAZyme | HRGMv2_0429_2 | HRGMv2_0429_2_136 | 157629 | 160097 | + | GH95 |
| CAZyme | HRGMv2_0429_2 | HRGMv2_0429_2_137 | 160202 | 162304 | + | CBM91 | GH43_10 |
| TC | HRGMv2_0429_2 | HRGMv2_0429_2_138 | 162292 | 163038 | - | 1.B.44.1.2 |
Gene ID: HRGMv2_0429_2_124
Type: TC
Location: 134932 - 135234 (+)
Type: TC
Location: 134932 - 135234 (+)
Gene ID: HRGMv2_0429_2_125
Type: TC
Location: 135278 - 138205 (+)
Type: TC
Location: 135278 - 138205 (+)
Gene ID: HRGMv2_0429_2_126
Type: pfam
Location: 138228 - 140159 (+)
Type: pfam
Location: 138228 - 140159 (+)
Gene ID: HRGMv2_0429_2_127
Type:
Location: 140247 - 140387 (+)
Type:
Location: 140247 - 140387 (+)
Gene ID: HRGMv2_0429_2_128
Type: CAZyme
Location: 140393 - 142990 (+)
Type: CAZyme
Location: 140393 - 142990 (+)
Gene ID: HRGMv2_0429_2_129
Type: CAZyme
Location: 142980 - 145499 (+)
Type: CAZyme
Location: 142980 - 145499 (+)
Gene ID: HRGMv2_0429_2_130
Type:
Location: 145518 - 146222 (+)
Type:
Location: 145518 - 146222 (+)
Gene ID: HRGMv2_0429_2_131
Type: CAZyme
Location: 146231 - 147679 (+)
Type: CAZyme
Location: 146231 - 147679 (+)
Gene ID: HRGMv2_0429_2_132
Type: CAZyme
Location: 147708 - 149660 (+)
Type: CAZyme
Location: 147708 - 149660 (+)
Gene ID: HRGMv2_0429_2_133
Type: CAZyme
Location: 149688 - 152165 (+)
Type: CAZyme
Location: 149688 - 152165 (+)
Gene ID: HRGMv2_0429_2_134
Type: CAZyme
Location: 152181 - 154565 (+)
Type: CAZyme
Location: 152181 - 154565 (+)
Gene ID: HRGMv2_0429_2_135
Type: CAZyme
Location: 154600 - 157560 (+)
Type: CAZyme
Location: 154600 - 157560 (+)
Gene ID: HRGMv2_0429_2_136
Type: CAZyme
Location: 157629 - 160097 (+)
Type: CAZyme
Location: 157629 - 160097 (+)
Gene ID: HRGMv2_0429_2_137
Type: CAZyme
Location: 160202 - 162304 (+)
Type: CAZyme
Location: 160202 - 162304 (+)
Gene ID: HRGMv2_0429_2_138
Type: TC
Location: 162292 - 163038 (-)
Type: TC
Location: 162292 - 163038 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900548535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0429_2_128 | vegetarian > vegan | 1.11253 | 0.00567 |