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Cluster: HRGMv2_0402_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0402_42 HRGMv2_0402_42_5 4773 5753 + GT2
pfam HRGMv2_0402_42 HRGMv2_0402_42_6 5732 6694 + Acyl_transf_3
pfam HRGMv2_0402_42 HRGMv2_0402_42_7 6655 7029 + GtrA_DPMS_TM
CAZyme HRGMv2_0402_42 HRGMv2_0402_42_8 7026 7964 + GT2
pfam HRGMv2_0402_42 HRGMv2_0402_42_9 7967 9589 + DUF6056
pfam HRGMv2_0402_42 HRGMv2_0402_42_10 9633 10667 + Acyl_transf_3
CAZyme HRGMv2_0402_42 HRGMv2_0402_42_11 10670 11545 + GT11
CAZyme HRGMv2_0402_42 HRGMv2_0402_42_12 11561 12544 + GT2
NULL(UNKNOWN) HRGMv2_0402_42 HRGMv2_0402_42_13 12628 13917 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0402_42 HRGMv2_0402_42_14 13914 15059 + GT4
CAZyme HRGMv2_0402_42 HRGMv2_0402_42_15 15245 16477 + GT4
NULL(UNKNOWN) HRGMv2_0402_42 HRGMv2_0402_42_16 16683 17975 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0402_42 HRGMv2_0402_42_17 18070 19209 + GT4
TC HRGMv2_0402_42 HRGMv2_0402_42_18 19221 19847 + 9.B.18.1.3
Gene ID: HRGMv2_0402_42_5
Type: CAZyme
Location: 4773 - 5753 (+)
Gene ID: HRGMv2_0402_42_6
Type: pfam
Location: 5732 - 6694 (+)
Gene ID: HRGMv2_0402_42_7
Type: pfam
Location: 6655 - 7029 (+)
Gene ID: HRGMv2_0402_42_8
Type: CAZyme
Location: 7026 - 7964 (+)
Gene ID: HRGMv2_0402_42_9
Type: pfam
Location: 7967 - 9589 (+)
Gene ID: HRGMv2_0402_42_10
Type: pfam
Location: 9633 - 10667 (+)
Gene ID: HRGMv2_0402_42_11
Type: CAZyme
Location: 10670 - 11545 (+)
Gene ID: HRGMv2_0402_42_12
Type: CAZyme
Location: 11561 - 12544 (+)
Gene ID: HRGMv2_0402_42_13
Type:
Location: 12628 - 13917 (+)
Gene ID: HRGMv2_0402_42_14
Type: CAZyme
Location: 13914 - 15059 (+)
Gene ID: HRGMv2_0402_42_15
Type: CAZyme
Location: 15245 - 16477 (+)
Gene ID: HRGMv2_0402_42_16
Type:
Location: 16683 - 17975 (+)
Gene ID: HRGMv2_0402_42_17
Type: CAZyme
Location: 18070 - 19209 (+)
Gene ID: HRGMv2_0402_42_18
Type: TC
Location: 19221 - 19847 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0402_42_11 vegetarian > omnivore 1.40521 0.04821

🧭 Explore Read Mapping of CGC

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