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Cluster: HRGMv2_0341_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0341_11 HRGMv2_0341_11_48 58153 60507 + GH92
TC HRGMv2_0341_11 HRGMv2_0341_11_49 60522 61673 + 2.A.1.7.16
NULL(UNKNOWN) HRGMv2_0341_11 HRGMv2_0341_11_50 61807 63342 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0341_11 HRGMv2_0341_11_51 63355 64392 - 8.A.1.1.1
pfam HRGMv2_0341_11 HRGMv2_0341_11_52 64445 65623 - OEP | OEP
TF HRGMv2_0341_11 HRGMv2_0341_11_53 65952 66746 + HTH_AraC | HTH_AraC
TC HRGMv2_0341_11 HRGMv2_0341_11_54 66762 67544 - 3.A.1.27.5
TC HRGMv2_0341_11 HRGMv2_0341_11_55 67547 68293 - 3.A.1.27.1
TC HRGMv2_0341_11 HRGMv2_0341_11_56 68402 69154 + 1.B.42.1.2
Gene ID: HRGMv2_0341_11_48
Type: CAZyme
Location: 58153 - 60507 (+)
Gene ID: HRGMv2_0341_11_49
Type: TC
Location: 60522 - 61673 (+)
Gene ID: HRGMv2_0341_11_50
Type:
Location: 61807 - 63342 (-)
Gene ID: HRGMv2_0341_11_51
Type: TC
Location: 63355 - 64392 (-)
Gene ID: HRGMv2_0341_11_52
Type: pfam
Location: 64445 - 65623 (-)
Gene ID: HRGMv2_0341_11_53
Type: TF
Location: 65952 - 66746 (+)
Gene ID: HRGMv2_0341_11_54
Type: TC
Location: 66762 - 67544 (-)
Gene ID: HRGMv2_0341_11_55
Type: TC
Location: 67547 - 68293 (-)
Gene ID: HRGMv2_0341_11_56
Type: TC
Location: 68402 - 69154 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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