dbCAN Logo

Cluster: HRGMv2_0320_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0320_18 HRGMv2_0320_18_18 38193 41702 + CBM67 | GH78
NULL(UNKNOWN) HRGMv2_0320_18 HRGMv2_0320_18_19 41762 41875 - NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_0320_18 HRGMv2_0320_18_20 42117 42758 + Sigma70_r2 | Sigma70_r4_2
CAZyme HRGMv2_0320_18 HRGMv2_0320_18_21 42829 44064 + CBM32
TC HRGMv2_0320_18 HRGMv2_0320_18_22 44101 47397 + 1.B.14.6.1
pfam HRGMv2_0320_18 HRGMv2_0320_18_23 47420 49447 + SusD_RagB | SusD-like_3
pfam HRGMv2_0320_18 HRGMv2_0320_18_24 49555 50352 + DUF4886
CAZyme HRGMv2_0320_18 HRGMv2_0320_18_25 50789 53266 + CBM91 | GH43_19 | GH43_9
NULL(UNKNOWN) HRGMv2_0320_18 HRGMv2_0320_18_26 53474 53590 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0320_18 HRGMv2_0320_18_27 53654 55420 + GH97
CAZyme HRGMv2_0320_18 HRGMv2_0320_18_28 55693 57342 + CBM91 | GH43_10
CAZyme HRGMv2_0320_18 HRGMv2_0320_18_29 57375 58592 + GH88
pfam HRGMv2_0320_18 HRGMv2_0320_18_30 58731 59906 - UxuA
CAZyme HRGMv2_0320_18 HRGMv2_0320_18_31 59993 62020 - GH67
CAZyme HRGMv2_0320_18 HRGMv2_0320_18_32 62146 63117 - GH43_1
CAZyme HRGMv2_0320_18 HRGMv2_0320_18_33 63137 64282 - GH10
TC HRGMv2_0320_18 HRGMv2_0320_18_34 64345 65757 - 2.A.2.3.2
CAZyme HRGMv2_0320_18 HRGMv2_0320_18_35 65787 67502 - CE20 | CE20
CAZyme HRGMv2_0320_18 HRGMv2_0320_18_36 67528 69243 - GH35
TF HRGMv2_0320_18 HRGMv2_0320_18_37 69860 73960 + HTH_AraC
NULL(UNKNOWN) HRGMv2_0320_18 HRGMv2_0320_18_38 74424 75635 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0320_18 HRGMv2_0320_18_39 75650 76294 - 3.A.1.12.5
Gene ID: HRGMv2_0320_18_18
Type: CAZyme
Location: 38193 - 41702 (+)
Gene ID: HRGMv2_0320_18_19
Type:
Location: 41762 - 41875 (-)
Gene ID: HRGMv2_0320_18_20
Type: STP
Location: 42117 - 42758 (+)
Gene ID: HRGMv2_0320_18_21
Type: CAZyme
Location: 42829 - 44064 (+)
Gene ID: HRGMv2_0320_18_22
Type: TC
Location: 44101 - 47397 (+)
Gene ID: HRGMv2_0320_18_23
Type: pfam
Location: 47420 - 49447 (+)
Gene ID: HRGMv2_0320_18_24
Type: pfam
Location: 49555 - 50352 (+)
Gene ID: HRGMv2_0320_18_25
Type: CAZyme
Location: 50789 - 53266 (+)
Gene ID: HRGMv2_0320_18_26
Type:
Location: 53474 - 53590 (+)
Gene ID: HRGMv2_0320_18_27
Type: CAZyme
Location: 53654 - 55420 (+)
Gene ID: HRGMv2_0320_18_28
Type: CAZyme
Location: 55693 - 57342 (+)
Gene ID: HRGMv2_0320_18_29
Type: CAZyme
Location: 57375 - 58592 (+)
Gene ID: HRGMv2_0320_18_30
Type: pfam
Location: 58731 - 59906 (-)
Gene ID: HRGMv2_0320_18_31
Type: CAZyme
Location: 59993 - 62020 (-)
Gene ID: HRGMv2_0320_18_32
Type: CAZyme
Location: 62146 - 63117 (-)
Gene ID: HRGMv2_0320_18_33
Type: CAZyme
Location: 63137 - 64282 (-)
Gene ID: HRGMv2_0320_18_34
Type: TC
Location: 64345 - 65757 (-)
Gene ID: HRGMv2_0320_18_35
Type: CAZyme
Location: 65787 - 67502 (-)
Gene ID: HRGMv2_0320_18_36
Type: CAZyme
Location: 67528 - 69243 (-)
Gene ID: HRGMv2_0320_18_37
Type: TF
Location: 69860 - 73960 (+)
Gene ID: HRGMv2_0320_18_38
Type:
Location: 74424 - 75635 (-)
Gene ID: HRGMv2_0320_18_39
Type: TC
Location: 75650 - 76294 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List