Cluster: HRGMv2_0308_CGC18
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0308
- CGC Family ID: CGCFAM_01593
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0308_14 | HRGMv2_0308_14_23 | 25579 | 26625 | + | GT2 |
| pfam | HRGMv2_0308_14 | HRGMv2_0308_14_24 | 26622 | 27302 | + | RadC | UPF0758_N |
| NULL(UNKNOWN) | HRGMv2_0308_14 | HRGMv2_0308_14_25 | 27305 | 29491 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0308_14 | HRGMv2_0308_14_26 | 29488 | 31743 | - | GH3 |
| pfam | HRGMv2_0308_14 | HRGMv2_0308_14_27 | 31876 | 33168 | - | SusF_SusE |
| CAZyme | HRGMv2_0308_14 | HRGMv2_0308_14_28 | 33219 | 34649 | - | GH27 |
| pfam | HRGMv2_0308_14 | HRGMv2_0308_14_29 | 34663 | 36219 | - | SusF_SusE | SusF_SusE | SusF_SusE |
| TC | HRGMv2_0308_14 | HRGMv2_0308_14_30 | 36282 | 37988 | - | 8.A.46.1.1 |
| TC | HRGMv2_0308_14 | HRGMv2_0308_14_31 | 38039 | 41338 | - | 1.B.14.6.1 |
| STP | HRGMv2_0308_14 | HRGMv2_0308_14_32 | 41606 | 42196 | + | Sigma70_r2 | Sigma70_r4_2 |
| STP | HRGMv2_0308_14 | HRGMv2_0308_14_33 | 42202 | 43221 | + | FecR |
| CAZyme | HRGMv2_0308_14 | HRGMv2_0308_14_34 | 43287 | 44282 | + | GH43_34 |
Gene ID: HRGMv2_0308_14_23
Type: CAZyme
Location: 25579 - 26625 (+)
Type: CAZyme
Location: 25579 - 26625 (+)
Gene ID: HRGMv2_0308_14_24
Type: pfam
Location: 26622 - 27302 (+)
Type: pfam
Location: 26622 - 27302 (+)
Gene ID: HRGMv2_0308_14_25
Type:
Location: 27305 - 29491 (-)
Type:
Location: 27305 - 29491 (-)
Gene ID: HRGMv2_0308_14_26
Type: CAZyme
Location: 29488 - 31743 (-)
Type: CAZyme
Location: 29488 - 31743 (-)
Gene ID: HRGMv2_0308_14_27
Type: pfam
Location: 31876 - 33168 (-)
Type: pfam
Location: 31876 - 33168 (-)
Gene ID: HRGMv2_0308_14_28
Type: CAZyme
Location: 33219 - 34649 (-)
Type: CAZyme
Location: 33219 - 34649 (-)
Gene ID: HRGMv2_0308_14_29
Type: pfam
Location: 34663 - 36219 (-)
Type: pfam
Location: 34663 - 36219 (-)
Gene ID: HRGMv2_0308_14_30
Type: TC
Location: 36282 - 37988 (-)
Type: TC
Location: 36282 - 37988 (-)
Gene ID: HRGMv2_0308_14_31
Type: TC
Location: 38039 - 41338 (-)
Type: TC
Location: 38039 - 41338 (-)
Gene ID: HRGMv2_0308_14_32
Type: STP
Location: 41606 - 42196 (+)
Type: STP
Location: 41606 - 42196 (+)
Gene ID: HRGMv2_0308_14_33
Type: STP
Location: 42202 - 43221 (+)
Type: STP
Location: 42202 - 43221 (+)
Gene ID: HRGMv2_0308_14_34
Type: CAZyme
Location: 43287 - 44282 (+)
Type: CAZyme
Location: 43287 - 44282 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.