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Cluster: HRGMv2_0297_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0297_11 HRGMv2_0297_11_42 51253 54339 + 1.B.14.6.1
TC HRGMv2_0297_11 HRGMv2_0297_11_43 54352 55962 + 8.A.46.1.3
CAZyme HRGMv2_0297_11 HRGMv2_0297_11_44 55990 57189 + CE1
CAZyme HRGMv2_0297_11 HRGMv2_0297_11_45 57202 59544 + GH3
NULL(UNKNOWN) HRGMv2_0297_11 HRGMv2_0297_11_46 59551 59646 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0297_11 HRGMv2_0297_11_47 59775 61772 - GH20
pfam HRGMv2_0297_11 HRGMv2_0297_11_48 62177 64219 + tRNA-synt_1 | tRNA_bind | Anticodon_1 | tRNA-synt_1g | Anticodon_3
TC HRGMv2_0297_11 HRGMv2_0297_11_49 64323 65777 + 2.A.66.2.23
NULL(UNKNOWN) HRGMv2_0297_11 HRGMv2_0297_11_50 65774 66694 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_0297_11 HRGMv2_0297_11_51 66702 67709 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0297_11 HRGMv2_0297_11_52 67735 68625 + GT2
pfam HRGMv2_0297_11 HRGMv2_0297_11_53 68629 69540 + Glycos_transf_2
CAZyme HRGMv2_0297_11 HRGMv2_0297_11_54 69593 70855 + GT4
CAZyme HRGMv2_0297_11 HRGMv2_0297_11_55 70848 71603 + GT2
peptidase HRGMv2_0297_11 HRGMv2_0297_11_56 71676 73211 + M48.UNW
TC HRGMv2_0297_11 HRGMv2_0297_11_57 73383 75878 - 9.B.144.1.4
Gene ID: HRGMv2_0297_11_42
Type: TC
Location: 51253 - 54339 (+)
Gene ID: HRGMv2_0297_11_43
Type: TC
Location: 54352 - 55962 (+)
Gene ID: HRGMv2_0297_11_44
Type: CAZyme
Location: 55990 - 57189 (+)
Gene ID: HRGMv2_0297_11_45
Type: CAZyme
Location: 57202 - 59544 (+)
Gene ID: HRGMv2_0297_11_46
Type:
Location: 59551 - 59646 (+)
Gene ID: HRGMv2_0297_11_47
Type: CAZyme
Location: 59775 - 61772 (-)
Gene ID: HRGMv2_0297_11_48
Type: pfam
Location: 62177 - 64219 (+)
Gene ID: HRGMv2_0297_11_49
Type: TC
Location: 64323 - 65777 (+)
Gene ID: HRGMv2_0297_11_50
Type:
Location: 65774 - 66694 (+)
Gene ID: HRGMv2_0297_11_51
Type:
Location: 66702 - 67709 (+)
Gene ID: HRGMv2_0297_11_52
Type: CAZyme
Location: 67735 - 68625 (+)
Gene ID: HRGMv2_0297_11_53
Type: pfam
Location: 68629 - 69540 (+)
Gene ID: HRGMv2_0297_11_54
Type: CAZyme
Location: 69593 - 70855 (+)
Gene ID: HRGMv2_0297_11_55
Type: CAZyme
Location: 70848 - 71603 (+)
Gene ID: HRGMv2_0297_11_56
Type: peptidase
Location: 71676 - 73211 (+)
Gene ID: HRGMv2_0297_11_57
Type: TC
Location: 73383 - 75878 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0297_11_43 vegetarian > omnivore 1.15902 0.02872
HRGMv2_0297_11_43 vegetarian > vegan 1.17938 0.03214
HRGMv2_0297_11_45 vegetarian > omnivore 1.08859 0.02872
HRGMv2_0297_11_47 vegetarian > vegan 1.01878 0.03214
HRGMv2_0297_11_50 vegetarian > omnivore 1.23943 0.02872
HRGMv2_0297_11_51 vegetarian > omnivore 1.28574 0.02872

🧭 Explore Read Mapping of CGC

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