Cluster: HRGMv2_0217_CGC12
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0217
- CGC Family ID: CGCFAM_09541
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0217_62 | HRGMv2_0217_62_40 | 53103 | 53888 | + | 1.B.44.1.2 |
| CAZyme | HRGMv2_0217_62 | HRGMv2_0217_62_41 | 53890 | 55089 | - | GH43_10 |
| CAZyme | HRGMv2_0217_62 | HRGMv2_0217_62_42 | 55200 | 58151 | - | CBM6 | CBM91 | GH43_10 | GH43_29 |
| CAZyme | HRGMv2_0217_62 | HRGMv2_0217_62_43 | 58206 | 60809 | - | GH3 |
| pfam | HRGMv2_0217_62 | HRGMv2_0217_62_44 | 60945 | 61559 | - | Bac_DNA_binding | HU-HIG |
| CAZyme | HRGMv2_0217_62 | HRGMv2_0217_62_45 | 61818 | 63308 | - | GH43_7 |
| NULL(UNKNOWN) | HRGMv2_0217_62 | HRGMv2_0217_62_46 | 63329 | 64033 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0217_62 | HRGMv2_0217_62_47 | 64186 | 65988 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0217_62 | HRGMv2_0217_62_48 | 66007 | 69108 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0217_62_40
Type: TC
Location: 53103 - 53888 (+)
Type: TC
Location: 53103 - 53888 (+)
Gene ID: HRGMv2_0217_62_41
Type: CAZyme
Location: 53890 - 55089 (-)
Type: CAZyme
Location: 53890 - 55089 (-)
Gene ID: HRGMv2_0217_62_42
Type: CAZyme
Location: 55200 - 58151 (-)
Type: CAZyme
Location: 55200 - 58151 (-)
Gene ID: HRGMv2_0217_62_43
Type: CAZyme
Location: 58206 - 60809 (-)
Type: CAZyme
Location: 58206 - 60809 (-)
Gene ID: HRGMv2_0217_62_44
Type: pfam
Location: 60945 - 61559 (-)
Type: pfam
Location: 60945 - 61559 (-)
Gene ID: HRGMv2_0217_62_45
Type: CAZyme
Location: 61818 - 63308 (-)
Type: CAZyme
Location: 61818 - 63308 (-)
Gene ID: HRGMv2_0217_62_46
Type:
Location: 63329 - 64033 (-)
Type:
Location: 63329 - 64033 (-)
Gene ID: HRGMv2_0217_62_47
Type: pfam
Location: 64186 - 65988 (-)
Type: pfam
Location: 64186 - 65988 (-)
Gene ID: HRGMv2_0217_62_48
Type: TC
Location: 66007 - 69108 (-)
Type: TC
Location: 66007 - 69108 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900544825
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0217_62_44 | vegetarian > vegan | 9.17969 | 0.01274 |
| HRGMv2_0217_62_47 | vegetarian > vegan | 1.15908 | 0.01274 |