Cluster: HRGMv2_0185_CGC14
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0185
- CGC Family ID: CGCFAM_05951
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0185_11 | HRGMv2_0185_11_6 | 5690 | 8827 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0185_11 | HRGMv2_0185_11_7 | 9657 | 10979 | + | OEP | OEP |
| TC | HRGMv2_0185_11 | HRGMv2_0185_11_8 | 11050 | 12147 | + | 8.A.1.1.2 |
| NULL(UNKNOWN) | HRGMv2_0185_11 | HRGMv2_0185_11_9 | 12279 | 13955 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0185_11 | HRGMv2_0185_11_10 | 14012 | 14896 | + | HTH_AraC |
| CAZyme | HRGMv2_0185_11 | HRGMv2_0185_11_11 | 15113 | 16903 | - | GH141 |
| TC | HRGMv2_0185_11 | HRGMv2_0185_11_12 | 17149 | 19068 | - | 3.A.18.1.1 |
| NULL(UNKNOWN) | HRGMv2_0185_11 | HRGMv2_0185_11_13 | 19113 | 19235 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0185_11 | HRGMv2_0185_11_14 | 19263 | 19796 | + | Lysine_decarbox | LDcluster4 |
| TC | HRGMv2_0185_11 | HRGMv2_0185_11_15 | 20026 | 21228 | - | 2.A.23.2.11 |
Gene ID: HRGMv2_0185_11_6
Type: TC
Location: 5690 - 8827 (-)
Type: TC
Location: 5690 - 8827 (-)
Gene ID: HRGMv2_0185_11_7
Type: pfam
Location: 9657 - 10979 (+)
Type: pfam
Location: 9657 - 10979 (+)
Gene ID: HRGMv2_0185_11_8
Type: TC
Location: 11050 - 12147 (+)
Type: TC
Location: 11050 - 12147 (+)
Gene ID: HRGMv2_0185_11_9
Type:
Location: 12279 - 13955 (+)
Type:
Location: 12279 - 13955 (+)
Gene ID: HRGMv2_0185_11_10
Type: TF
Location: 14012 - 14896 (+)
Type: TF
Location: 14012 - 14896 (+)
Gene ID: HRGMv2_0185_11_11
Type: CAZyme
Location: 15113 - 16903 (-)
Type: CAZyme
Location: 15113 - 16903 (-)
Gene ID: HRGMv2_0185_11_12
Type: TC
Location: 17149 - 19068 (-)
Type: TC
Location: 17149 - 19068 (-)
Gene ID: HRGMv2_0185_11_13
Type:
Location: 19113 - 19235 (+)
Type:
Location: 19113 - 19235 (+)
Gene ID: HRGMv2_0185_11_14
Type: pfam
Location: 19263 - 19796 (+)
Type: pfam
Location: 19263 - 19796 (+)
Gene ID: HRGMv2_0185_11_15
Type: TC
Location: 20026 - 21228 (-)
Type: TC
Location: 20026 - 21228 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella rara
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0185_11_11 | vegetarian > vegan | 1.18948 | 0.00160 |
| HRGMv2_0185_11_14 | vegetarian > vegan | 1.42164 | 0.00160 |
| HRGMv2_0185_11_15 | vegetarian > omnivore | 1.10198 | 0.01930 |
| HRGMv2_0185_11_15 | vegetarian > vegan | 1.10497 | 0.00160 |