Cluster: HRGMv2_0159_CGC60
🧬 Cluster Details
- Gene Count: 22
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_0159
- CGC Family ID: CGCFAM_05708
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0159_12 | HRGMv2_0159_12_92 | 143432 | 145210 | - | 3.B.1.1.6 |
| pfam | HRGMv2_0159_12 | HRGMv2_0159_12_93 | 145528 | 146025 | - | Bac_DNA_binding | HU-HIG |
| NULL(UNKNOWN) | HRGMv2_0159_12 | HRGMv2_0159_12_94 | 145982 | 146143 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0159_12 | HRGMv2_0159_12_95 | 146222 | 149107 | - | GH2 |
| TF | HRGMv2_0159_12 | HRGMv2_0159_12_96 | 149293 | 153600 | - | HTH_AraC |
| pfam | HRGMv2_0159_12 | HRGMv2_0159_12_97 | 154026 | 154247 | - | DUF4248 |
| CAZyme | HRGMv2_0159_12 | HRGMv2_0159_12_98 | 154379 | 157669 | - | GH106 |
| pfam | HRGMv2_0159_12 | HRGMv2_0159_12_99 | 157760 | 159358 | - | Mfa_like_1 |
| pfam | HRGMv2_0159_12 | HRGMv2_0159_12_100 | 159413 | 160318 | - | Mfa_like_1 |
| CAZyme | HRGMv2_0159_12 | HRGMv2_0159_12_101 | 160351 | 162453 | - | PL11_1 |
| NULL(UNKNOWN) | HRGMv2_0159_12 | HRGMv2_0159_12_102 | 162493 | 164208 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0159_12 | HRGMv2_0159_12_103 | 164214 | 167339 | - | 1.B.14.6.2 |
| NULL(UNKNOWN) | HRGMv2_0159_12 | HRGMv2_0159_12_104 | 167385 | 169070 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0159_12 | HRGMv2_0159_12_105 | 169079 | 170806 | - | Fasciclin | DUF5108 |
| TC | HRGMv2_0159_12 | HRGMv2_0159_12_106 | 170814 | 172358 | - | 8.A.46.1.4 |
| TC | HRGMv2_0159_12 | HRGMv2_0159_12_107 | 172370 | 175660 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0159_12 | HRGMv2_0159_12_108 | 175681 | 177990 | - | Fasciclin |
| CAZyme | HRGMv2_0159_12 | HRGMv2_0159_12_109 | 178286 | 180346 | - | GH2 |
| CAZyme | HRGMv2_0159_12 | HRGMv2_0159_12_110 | 180354 | 181580 | - | GH88 |
| CAZyme | HRGMv2_0159_12 | HRGMv2_0159_12_111 | 181614 | 182834 | - | GH154 |
| CAZyme | HRGMv2_0159_12 | HRGMv2_0159_12_112 | 182891 | 185881 | - | GH2 |
| CAZyme | HRGMv2_0159_12 | HRGMv2_0159_12_113 | 186085 | 187719 | + | GH28 |
Gene ID: HRGMv2_0159_12_92
Type: TC
Location: 143432 - 145210 (-)
Type: TC
Location: 143432 - 145210 (-)
Gene ID: HRGMv2_0159_12_93
Type: pfam
Location: 145528 - 146025 (-)
Type: pfam
Location: 145528 - 146025 (-)
Gene ID: HRGMv2_0159_12_94
Type:
Location: 145982 - 146143 (-)
Type:
Location: 145982 - 146143 (-)
Gene ID: HRGMv2_0159_12_95
Type: CAZyme
Location: 146222 - 149107 (-)
Type: CAZyme
Location: 146222 - 149107 (-)
Gene ID: HRGMv2_0159_12_96
Type: TF
Location: 149293 - 153600 (-)
Type: TF
Location: 149293 - 153600 (-)
Gene ID: HRGMv2_0159_12_97
Type: pfam
Location: 154026 - 154247 (-)
Type: pfam
Location: 154026 - 154247 (-)
Gene ID: HRGMv2_0159_12_98
Type: CAZyme
Location: 154379 - 157669 (-)
Type: CAZyme
Location: 154379 - 157669 (-)
Gene ID: HRGMv2_0159_12_99
Type: pfam
Location: 157760 - 159358 (-)
Type: pfam
Location: 157760 - 159358 (-)
Gene ID: HRGMv2_0159_12_100
Type: pfam
Location: 159413 - 160318 (-)
Type: pfam
Location: 159413 - 160318 (-)
Gene ID: HRGMv2_0159_12_101
Type: CAZyme
Location: 160351 - 162453 (-)
Type: CAZyme
Location: 160351 - 162453 (-)
Gene ID: HRGMv2_0159_12_102
Type:
Location: 162493 - 164208 (-)
Type:
Location: 162493 - 164208 (-)
Gene ID: HRGMv2_0159_12_103
Type: TC
Location: 164214 - 167339 (-)
Type: TC
Location: 164214 - 167339 (-)
Gene ID: HRGMv2_0159_12_104
Type:
Location: 167385 - 169070 (-)
Type:
Location: 167385 - 169070 (-)
Gene ID: HRGMv2_0159_12_105
Type: pfam
Location: 169079 - 170806 (-)
Type: pfam
Location: 169079 - 170806 (-)
Gene ID: HRGMv2_0159_12_106
Type: TC
Location: 170814 - 172358 (-)
Type: TC
Location: 170814 - 172358 (-)
Gene ID: HRGMv2_0159_12_107
Type: TC
Location: 172370 - 175660 (-)
Type: TC
Location: 172370 - 175660 (-)
Gene ID: HRGMv2_0159_12_108
Type: pfam
Location: 175681 - 177990 (-)
Type: pfam
Location: 175681 - 177990 (-)
Gene ID: HRGMv2_0159_12_109
Type: CAZyme
Location: 178286 - 180346 (-)
Type: CAZyme
Location: 178286 - 180346 (-)
Gene ID: HRGMv2_0159_12_110
Type: CAZyme
Location: 180354 - 181580 (-)
Type: CAZyme
Location: 180354 - 181580 (-)
Gene ID: HRGMv2_0159_12_111
Type: CAZyme
Location: 181614 - 182834 (-)
Type: CAZyme
Location: 181614 - 182834 (-)
Gene ID: HRGMv2_0159_12_112
Type: CAZyme
Location: 182891 - 185881 (-)
Type: CAZyme
Location: 182891 - 185881 (-)
Gene ID: HRGMv2_0159_12_113
Type: CAZyme
Location: 186085 - 187719 (+)
Type: CAZyme
Location: 186085 - 187719 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0159_12_95 | vegan > omnivore | 2.57958 | 0.00020 |
| HRGMv2_0159_12_95 | vegetarian > omnivore | 4.66956 | 0.00744 |
| HRGMv2_0159_12_109 | vegan > omnivore | 5.60663 | 0.00020 |
| HRGMv2_0159_12_109 | vegetarian > omnivore | 14.27509 | 0.00744 |
| HRGMv2_0159_12_113 | vegetarian > omnivore | 4.07795 | 0.00744 |