Cluster: C55.bin_4_CGC2
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: C55.bin_4
- CGC Family ID: CGCFAM_00003
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C55_contig_3613 | C55_contig_3613_39 | 40073 | 41731 | - | GT4 |
| TC | C55_contig_3613 | C55_contig_3613_40 | 41749 | 42951 | - | 3.A.1.103.5 |
| pfam | C55_contig_3613 | C55_contig_3613_41 | 42951 | 43757 | - | ABC2_membrane |
| CAZyme | C55_contig_3613 | C55_contig_3613_42 | 43757 | 44698 | - | GT2 |
| CAZyme | C55_contig_3613 | C55_contig_3613_43 | 44695 | 45843 | - | GT4 |
| pfam | C55_contig_3613 | C55_contig_3613_44 | 45951 | 46802 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| NULL(UNKNOWN) | C55_contig_3613 | C55_contig_3613_45 | 46868 | 48769 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C55_contig_3613 | C55_contig_3613_46 | 48766 | 49695 | - | GT2 |
| pfam | C55_contig_3613 | C55_contig_3613_47 | 49778 | 51256 | - | DUF2142 |
| CAZyme | C55_contig_3613 | C55_contig_3613_48 | 51266 | 52048 | - | GT2 |
| NULL(UNKNOWN) | C55_contig_3613 | C55_contig_3613_49 | 52038 | 53321 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C55_contig_3613 | C55_contig_3613_50 | 53311 | 53640 | - | DUF2304 |
| CAZyme | C55_contig_3613 | C55_contig_3613_51 | 53642 | 54352 | - | GT2 |
| pfam | C55_contig_3613 | C55_contig_3613_52 | 54480 | 55460 | + | GFO_IDH_MocA |
| TC | C55_contig_3613 | C55_contig_3613_53 | 55457 | 56542 | + | 1.I.1.1.3 |
| CAZyme | C55_contig_3613 | C55_contig_3613_54 | 56585 | 57967 | - | CE4 |
Gene ID: C55_contig_3613_39
Type: CAZyme
Location: 40073 - 41731 (-)
Type: CAZyme
Location: 40073 - 41731 (-)
Gene ID: C55_contig_3613_40
Type: TC
Location: 41749 - 42951 (-)
Type: TC
Location: 41749 - 42951 (-)
Gene ID: C55_contig_3613_41
Type: pfam
Location: 42951 - 43757 (-)
Type: pfam
Location: 42951 - 43757 (-)
Gene ID: C55_contig_3613_42
Type: CAZyme
Location: 43757 - 44698 (-)
Type: CAZyme
Location: 43757 - 44698 (-)
Gene ID: C55_contig_3613_43
Type: CAZyme
Location: 44695 - 45843 (-)
Type: CAZyme
Location: 44695 - 45843 (-)
Gene ID: C55_contig_3613_44
Type: pfam
Location: 45951 - 46802 (-)
Type: pfam
Location: 45951 - 46802 (-)
Gene ID: C55_contig_3613_45
Type:
Location: 46868 - 48769 (-)
Type:
Location: 46868 - 48769 (-)
Gene ID: C55_contig_3613_46
Type: CAZyme
Location: 48766 - 49695 (-)
Type: CAZyme
Location: 48766 - 49695 (-)
Gene ID: C55_contig_3613_47
Type: pfam
Location: 49778 - 51256 (-)
Type: pfam
Location: 49778 - 51256 (-)
Gene ID: C55_contig_3613_48
Type: CAZyme
Location: 51266 - 52048 (-)
Type: CAZyme
Location: 51266 - 52048 (-)
Gene ID: C55_contig_3613_49
Type:
Location: 52038 - 53321 (-)
Type:
Location: 52038 - 53321 (-)
Gene ID: C55_contig_3613_50
Type: pfam
Location: 53311 - 53640 (-)
Type: pfam
Location: 53311 - 53640 (-)
Gene ID: C55_contig_3613_51
Type: CAZyme
Location: 53642 - 54352 (-)
Type: CAZyme
Location: 53642 - 54352 (-)
Gene ID: C55_contig_3613_52
Type: pfam
Location: 54480 - 55460 (+)
Type: pfam
Location: 54480 - 55460 (+)
Gene ID: C55_contig_3613_53
Type: TC
Location: 55457 - 56542 (+)
Type: TC
Location: 55457 - 56542 (+)
Gene ID: C55_contig_3613_54
Type: CAZyme
Location: 56585 - 57967 (-)
Type: CAZyme
Location: 56585 - 57967 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus caecimuris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.