Cluster: C54.bin_6_CGC91
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_05259
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_scaffold_3399 | C54_scaffold_3399_1448 | 2070953 | 2073715 | - | 1.B.14.6.12 |
| STP | C54_scaffold_3399 | C54_scaffold_3399_1449 | 2073717 | 2074598 | - | FecR |
| NULL(UNKNOWN) | C54_scaffold_3399 | C54_scaffold_3399_1450 | 2074723 | 2075142 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1451 | 2075322 | 2076920 | - | GH28 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1452 | 2077230 | 2078270 | + | CE4 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_1453 | 2078394 | 2079275 | + | SASA |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1454 | 2079324 | 2082194 | + | GH106 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_1455 | 2082276 | 2083145 | + | Lipase_GDSL | Lipase_GDSL_2 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1456 | 2083630 | 2086797 | + | 1.B.14.6.1 |
| pfam | C54_scaffold_3399 | C54_scaffold_3399_1457 | 2086804 | 2088843 | + | SusD_RagB | SusD-like_3 |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1458 | 2088892 | 2089965 | + | 1.B.14.6.1 |
| NULL(UNKNOWN) | C54_scaffold_3399 | C54_scaffold_3399_1459 | 2090022 | 2091707 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C54_scaffold_3399 | C54_scaffold_3399_1460 | 2091737 | 2093470 | + | 8.A.46.1.3 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1461 | 2093600 | 2096464 | + | GH2 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_1462 | 2096574 | 2098178 | - | CBM91 | GH43_12 |
Gene ID: C54_scaffold_3399_1448
Type: TC
Location: 2070953 - 2073715 (-)
Type: TC
Location: 2070953 - 2073715 (-)
Gene ID: C54_scaffold_3399_1449
Type: STP
Location: 2073717 - 2074598 (-)
Type: STP
Location: 2073717 - 2074598 (-)
Gene ID: C54_scaffold_3399_1450
Type:
Location: 2074723 - 2075142 (-)
Type:
Location: 2074723 - 2075142 (-)
Gene ID: C54_scaffold_3399_1451
Type: CAZyme
Location: 2075322 - 2076920 (-)
Type: CAZyme
Location: 2075322 - 2076920 (-)
Gene ID: C54_scaffold_3399_1452
Type: CAZyme
Location: 2077230 - 2078270 (+)
Type: CAZyme
Location: 2077230 - 2078270 (+)
Gene ID: C54_scaffold_3399_1453
Type: pfam
Location: 2078394 - 2079275 (+)
Type: pfam
Location: 2078394 - 2079275 (+)
Gene ID: C54_scaffold_3399_1454
Type: CAZyme
Location: 2079324 - 2082194 (+)
Type: CAZyme
Location: 2079324 - 2082194 (+)
Gene ID: C54_scaffold_3399_1455
Type: pfam
Location: 2082276 - 2083145 (+)
Type: pfam
Location: 2082276 - 2083145 (+)
Gene ID: C54_scaffold_3399_1456
Type: TC
Location: 2083630 - 2086797 (+)
Type: TC
Location: 2083630 - 2086797 (+)
Gene ID: C54_scaffold_3399_1457
Type: pfam
Location: 2086804 - 2088843 (+)
Type: pfam
Location: 2086804 - 2088843 (+)
Gene ID: C54_scaffold_3399_1458
Type: TC
Location: 2088892 - 2089965 (+)
Type: TC
Location: 2088892 - 2089965 (+)
Gene ID: C54_scaffold_3399_1459
Type:
Location: 2090022 - 2091707 (+)
Type:
Location: 2090022 - 2091707 (+)
Gene ID: C54_scaffold_3399_1460
Type: TC
Location: 2091737 - 2093470 (+)
Type: TC
Location: 2091737 - 2093470 (+)
Gene ID: C54_scaffold_3399_1461
Type: CAZyme
Location: 2093600 - 2096464 (+)
Type: CAZyme
Location: 2093600 - 2096464 (+)
Gene ID: C54_scaffold_3399_1462
Type: CAZyme
Location: 2096574 - 2098178 (-)
Type: CAZyme
Location: 2096574 - 2098178 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_1449 | vegan > omnivore | 1.93818 | 0.01049 |
| C54_scaffold_3399_1449 | vegetarian > omnivore | 2.03132 | 0.00141 |