PROTEIN: C54_scaffold_3399_1459
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Protein File & Metadata
Source:
C54_scaffold_3399_1459.pdb
Genome ID:
Protein ID:
C54_scaffold_3399_1459
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Protein Sequence
MKLTQDLSGL TKGLNAFVRI SYDNIANIYE DHSKEYVYSV NAPTWADGAS EPTVKSEIYG 60 KDSEMGTDAK TNEFDRLLHF DVGFNYQRTF GDHSIYSQLK WDYENNDPNG VNNTVNRQNI 120 TWWSHYGYLN RYFVDLALVE SGSSRLAPGT KWAFSPTLSA AWVISKEKFM ENVKWVNFLK 180 LRASAGIINV DNLPGDEVWS YYAQQYGTSG GTYPFDSGWN SSFGRSYLER VATTNPSHEK 240 AYKYNVGVDA KLFGCLDVTL DLWKEHRTNI WVTSEGKYSE IFGMDPPYEN AGIVDSKGIE 300 VGLDYSKKLG QVEFNVGGNF SLNKNEIKEM LEEPRQYANL VQTGNPYEQL YGLEAIGFFK 360 DEADIAASPT QNFSTVKPGD IKYRDVNGDN IIDANDKVAI GYSTTCPEIY YSLHLGAEWK 420 GIGFYAMFQG TGNYSAVLDT KSMYWPLINN TNISQYAYDN RWTPQNQNAK FPRLSSQSNA 480 NNYQTSTLWL ADRSFLKLRN LEVYYKLPAS WLKKTKIVNA AKLYVRGIDL FSFDHIDEND 540 PEAYGINPMT KSVALGLSVT F 561
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-A0A0H4IV14-F1-model_v4 | 72 | 561 | 14 | 397 | 0.583 |
0.7125 |
| AF-P31827-F1-model_v4 | 1 | 561 | 321 | 790 | 0.4939 |
0.6832 |
| AF-Q9I2I2-F1-model_v4 | 1 | 561 | 289 | 653 | 0.4939 |
0.7966 |
| AF-Q9I258-F1-model_v4 | 1 | 561 | 340 | 844 | 0.4839 |
0.6446 |
| AF-Q9I226-F1-model_v4 | 1 | 561 | 410 | 883 | 0.4711 |
0.6749 |
| AF-Q9I5F7-F1-model_v4 | 1 | 561 | 249 | 640 | 0.4431 |
0.6796 |
| AF-O25950-F1-model_v4 | 1 | 561 | 236 | 717 | 0.4202 |
0.5801 |
| AF-Q9I245-F1-model_v4 | 1 | 561 | 203 | 788 | 0.4095 |
0.5043 |
Structural Homologs -
CAZyme3D-Whole
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A0A223HUM7 | GH35 | 1 | 561 | 963 | 1571 | 0.5753 |
0.8494 |
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A0A223HUM7 | GH35 | 1 | 561 | 963 | 1571 | 0.5753 |
0.8494 |
Structural Homologs -
PDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| 6z8i-assembly1.cif.gz_B | 1 | 561 | 221 | 807 | 0.7136 |
0.8475 |
| 8a9y-assembly1.cif.gz_I | 1 | 561 | 347 | 903 | 0.6615 |
0.8255 |
| 6zlt-assembly1.cif.gz_B-2 | 1 | 561 | 347 | 933 | 0.6606 |
0.8291 |
| 8aa4-assembly1.cif.gz_B | 1 | 561 | 320 | 871 | 0.6485 |
0.805 |
| 6slj-assembly1.cif.gz_A | 1 | 561 | 351 | 898 | 0.6467 |
0.8179 |
| 6sln-assembly1.cif.gz_B | 1 | 561 | 351 | 902 | 0.6455 |
0.8122 |
| 6sm3-assembly1.cif.gz_B | 1 | 561 | 351 | 903 | 0.6446 |
0.81 |
| 6sli-assembly1.cif.gz_B | 1 | 561 | 351 | 900 | 0.6442 |
0.8128 |
| 6sml-assembly1.cif.gz_B | 1 | 561 | 363 | 911 | 0.6412 |
0.8141 |
| 5fq6-assembly1.cif.gz_M | 1 | 561 | 351 | 948 | 0.61 |
0.7691 |
Structural Homologs -
SwissProt
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-T2KM18-F1-model_v4 | 1 | 561 | 411 | 990 | 0.6577 |
0.8424 |
| AF-T2KPJ3-F1-model_v4 | 1 | 561 | 427 | 1001 | 0.6439 |
0.828 |
| AF-T2KMI3-F1-model_v4 | 1 | 561 | 437 | 1038 | 0.6371 |
0.8299 |
| AF-Q8A1G1-F1-model_v4 | 1 | 561 | 449 | 1003 | 0.6193 |
0.8052 |
| AF-A5F9G0-F1-model_v4 | 1 | 561 | 286 | 652 | 0.499 |
0.803 |
| AF-P31827-F1-model_v4 | 1 | 561 | 321 | 790 | 0.4939 |
0.6832 |