Cluster: C54.bin_6_CGC62
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_01918
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_scaffold_3399 | C54_scaffold_3399_301 | 433231 | 436485 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | C54_scaffold_3399 | C54_scaffold_3399_302 | 436660 | 439194 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_303 | 439818 | 440879 | + | GH5_13 |
| CAZyme | C54_scaffold_3399 | C54_scaffold_3399_304 | 440884 | 442431 | + | GH51_1 |
Gene ID: C54_scaffold_3399_301
Type: TC
Location: 433231 - 436485 (-)
Type: TC
Location: 433231 - 436485 (-)
Gene ID: C54_scaffold_3399_302
Type:
Location: 436660 - 439194 (-)
Type:
Location: 436660 - 439194 (-)
Gene ID: C54_scaffold_3399_303
Type: CAZyme
Location: 439818 - 440879 (+)
Type: CAZyme
Location: 439818 - 440879 (+)
Gene ID: C54_scaffold_3399_304
Type: CAZyme
Location: 440884 - 442431 (+)
Type: CAZyme
Location: 440884 - 442431 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_scaffold_3399_301 | vegan > omnivore | 3.61799 | 0.01049 |
| C54_scaffold_3399_301 | vegetarian > omnivore | 3.36914 | 0.00141 |