Cluster: C54.bin_6_CGC50
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_00297
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_contig_3258 | C54_contig_3258_1514 | 1778396 | 1779376 | - | GH43_29 |
| CAZyme | C54_contig_3258 | C54_contig_3258_1515 | 1779382 | 1781364 | - | GH51_2 |
| CAZyme | C54_contig_3258 | C54_contig_3258_1516 | 1781391 | 1782878 | - | GH43_4 |
| CAZyme | C54_contig_3258 | C54_contig_3258_1517 | 1782998 | 1785094 | - | GH51_1 |
| CAZyme | C54_contig_3258 | C54_contig_3258_1518 | 1785348 | 1786919 | - | GH51_1 |
| TF | C54_contig_3258 | C54_contig_3258_1519 | 1787139 | 1791368 | + | HTH_AraC |
| pfam | C54_contig_3258 | C54_contig_3258_1520 | 1791837 | 1794104 | + | Laminin_G_3 | Laminin_G_3 |
| TC | C54_contig_3258 | C54_contig_3258_1521 | 1794130 | 1797249 | + | 1.B.14.6.1 |
| pfam | C54_contig_3258 | C54_contig_3258_1522 | 1797261 | 1799033 | + | SusD_RagB | SusD-like_3 |
| TC | C54_contig_3258 | C54_contig_3258_1523 | 1799047 | 1802235 | + | 1.B.14.6.2 |
| pfam | C54_contig_3258 | C54_contig_3258_1524 | 1802242 | 1804095 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | C54_contig_3258 | C54_contig_3258_1525 | 1804122 | 1804523 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C54_contig_3258 | C54_contig_3258_1526 | 1804836 | 1806749 | + | GH43_4 |
| sulfatase | C54_contig_3258 | C54_contig_3258_1527 | 1807036 | 1808175 | + | S1_22 |
| TC | C54_contig_3258 | C54_contig_3258_1528 | 1808201 | 1809895 | + | 2.A.21.3.19 |
Gene ID: C54_contig_3258_1514
Type: CAZyme
Location: 1778396 - 1779376 (-)
Type: CAZyme
Location: 1778396 - 1779376 (-)
Gene ID: C54_contig_3258_1515
Type: CAZyme
Location: 1779382 - 1781364 (-)
Type: CAZyme
Location: 1779382 - 1781364 (-)
Gene ID: C54_contig_3258_1516
Type: CAZyme
Location: 1781391 - 1782878 (-)
Type: CAZyme
Location: 1781391 - 1782878 (-)
Gene ID: C54_contig_3258_1517
Type: CAZyme
Location: 1782998 - 1785094 (-)
Type: CAZyme
Location: 1782998 - 1785094 (-)
Gene ID: C54_contig_3258_1518
Type: CAZyme
Location: 1785348 - 1786919 (-)
Type: CAZyme
Location: 1785348 - 1786919 (-)
Gene ID: C54_contig_3258_1519
Type: TF
Location: 1787139 - 1791368 (+)
Type: TF
Location: 1787139 - 1791368 (+)
Gene ID: C54_contig_3258_1520
Type: pfam
Location: 1791837 - 1794104 (+)
Type: pfam
Location: 1791837 - 1794104 (+)
Gene ID: C54_contig_3258_1521
Type: TC
Location: 1794130 - 1797249 (+)
Type: TC
Location: 1794130 - 1797249 (+)
Gene ID: C54_contig_3258_1522
Type: pfam
Location: 1797261 - 1799033 (+)
Type: pfam
Location: 1797261 - 1799033 (+)
Gene ID: C54_contig_3258_1523
Type: TC
Location: 1799047 - 1802235 (+)
Type: TC
Location: 1799047 - 1802235 (+)
Gene ID: C54_contig_3258_1524
Type: pfam
Location: 1802242 - 1804095 (+)
Type: pfam
Location: 1802242 - 1804095 (+)
Gene ID: C54_contig_3258_1525
Type:
Location: 1804122 - 1804523 (+)
Type:
Location: 1804122 - 1804523 (+)
Gene ID: C54_contig_3258_1526
Type: CAZyme
Location: 1804836 - 1806749 (+)
Type: CAZyme
Location: 1804836 - 1806749 (+)
Gene ID: C54_contig_3258_1527
Type: sulfatase
Location: 1807036 - 1808175 (+)
Type: sulfatase
Location: 1807036 - 1808175 (+)
Gene ID: C54_contig_3258_1528
Type: TC
Location: 1808201 - 1809895 (+)
Type: TC
Location: 1808201 - 1809895 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.