Cluster: C54.bin_6_CGC47
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_01482
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C54_contig_3258 | C54_contig_3258_1435 | 1668563 | 1671829 | + | 1.B.14.6.1 |
| pfam | C54_contig_3258 | C54_contig_3258_1436 | 1671877 | 1673178 | + | SusD_RagB | SusD-like_3 |
| pfam | C54_contig_3258 | C54_contig_3258_1437 | 1673272 | 1673976 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | C54_contig_3258 | C54_contig_3258_1438 | 1674048 | 1676201 | - | GH97 |
| pfam | C54_contig_3258 | C54_contig_3258_1439 | 1676233 | 1677405 | - | Metallophos | Pur_ac_phosph_N |
| CAZyme | C54_contig_3258 | C54_contig_3258_1440 | 1677428 | 1678636 | - | GH27 |
| TC | C54_contig_3258 | C54_contig_3258_1441 | 1678697 | 1678870 | - | 3.A.1.122.14 |
| NULL(UNKNOWN) | C54_contig_3258 | C54_contig_3258_1442 | 1679024 | 1679626 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | C54_contig_3258 | C54_contig_3258_1443 | 1679651 | 1680730 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C54_contig_3258 | C54_contig_3258_1444 | 1680753 | 1682741 | - | CBM51 | GH27 |
| pfam | C54_contig_3258 | C54_contig_3258_1445 | 1683073 | 1684215 | - | TIG | SGBP_B_XBD |
| pfam | C54_contig_3258 | C54_contig_3258_1446 | 1684247 | 1685974 | - | SusD_RagB | SusD-like_2 | SusD-like_3 |
| TC | C54_contig_3258 | C54_contig_3258_1447 | 1685987 | 1689238 | - | 1.B.14.6.1 |
Gene ID: C54_contig_3258_1435
Type: TC
Location: 1668563 - 1671829 (+)
Type: TC
Location: 1668563 - 1671829 (+)
Gene ID: C54_contig_3258_1436
Type: pfam
Location: 1671877 - 1673178 (+)
Type: pfam
Location: 1671877 - 1673178 (+)
Gene ID: C54_contig_3258_1437
Type: pfam
Location: 1673272 - 1673976 (-)
Type: pfam
Location: 1673272 - 1673976 (-)
Gene ID: C54_contig_3258_1438
Type: CAZyme
Location: 1674048 - 1676201 (-)
Type: CAZyme
Location: 1674048 - 1676201 (-)
Gene ID: C54_contig_3258_1439
Type: pfam
Location: 1676233 - 1677405 (-)
Type: pfam
Location: 1676233 - 1677405 (-)
Gene ID: C54_contig_3258_1440
Type: CAZyme
Location: 1677428 - 1678636 (-)
Type: CAZyme
Location: 1677428 - 1678636 (-)
Gene ID: C54_contig_3258_1441
Type: TC
Location: 1678697 - 1678870 (-)
Type: TC
Location: 1678697 - 1678870 (-)
Gene ID: C54_contig_3258_1442
Type:
Location: 1679024 - 1679626 (-)
Type:
Location: 1679024 - 1679626 (-)
Gene ID: C54_contig_3258_1443
Type:
Location: 1679651 - 1680730 (-)
Type:
Location: 1679651 - 1680730 (-)
Gene ID: C54_contig_3258_1444
Type: CAZyme
Location: 1680753 - 1682741 (-)
Type: CAZyme
Location: 1680753 - 1682741 (-)
Gene ID: C54_contig_3258_1445
Type: pfam
Location: 1683073 - 1684215 (-)
Type: pfam
Location: 1683073 - 1684215 (-)
Gene ID: C54_contig_3258_1446
Type: pfam
Location: 1684247 - 1685974 (-)
Type: pfam
Location: 1684247 - 1685974 (-)
Gene ID: C54_contig_3258_1447
Type: TC
Location: 1685987 - 1689238 (-)
Type: TC
Location: 1685987 - 1689238 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_3258_1435 | vegan > omnivore | 1.07497 | 0.01049 |