Cluster: C54.bin_6_CGC2
🧬 Cluster Details
- Gene Count: 24
- CAZyme Count: 12
- Substrate: xylan
- Genome ID: C54.bin_6
- CGC Family ID: CGCFAM_01235
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C54_contig_5485 | C54_contig_5485_21 | 30527 | 32680 | + | GH10 |
| pfam | C54_contig_5485 | C54_contig_5485_22 | 33209 | 34651 | + | PD40 |
| pfam | C54_contig_5485 | C54_contig_5485_23 | 34659 | 36083 | + | DUF6057 | DUF6057 |
| CAZyme | C54_contig_5485 | C54_contig_5485_24 | 36272 | 38218 | + | GH5_21 |
| CAZyme | C54_contig_5485 | C54_contig_5485_25 | 38440 | 39321 | + | CE1 |
| CAZyme | C54_contig_5485 | C54_contig_5485_26 | 39354 | 42578 | + | CE6 | GH95 |
| CAZyme | C54_contig_5485 | C54_contig_5485_27 | 42620 | 43873 | + | GH8 |
| TF | C54_contig_5485 | C54_contig_5485_28 | 43978 | 48084 | - | 0035607 |
| peptidase | C54_contig_5485 | C54_contig_5485_29 | 48329 | 49519 | - | C11.006 |
| CAZyme | C54_contig_5485 | C54_contig_5485_30 | 49631 | 51661 | - | GH67 |
| pfam | C54_contig_5485 | C54_contig_5485_31 | 51710 | 52690 | - | GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3 |
| CAZyme | C54_contig_5485 | C54_contig_5485_32 | 52715 | 53692 | - | GH43_1 |
| CAZyme | C54_contig_5485 | C54_contig_5485_33 | 53714 | 56413 | - | CBM91 | GH10 | GH43_12 |
| TC | C54_contig_5485 | C54_contig_5485_34 | 56431 | 57927 | - | 2.A.2.3.4 |
| CAZyme | C54_contig_5485 | C54_contig_5485_35 | 57959 | 59632 | - | CE20 | CE20 |
| CAZyme | C54_contig_5485 | C54_contig_5485_36 | 59670 | 61397 | - | GH35 |
| CAZyme | C54_contig_5485 | C54_contig_5485_37 | 61670 | 63973 | - | GH10 |
| pfam | C54_contig_5485 | C54_contig_5485_38 | 64005 | 65414 | - | SGBP_B_XBD |
| pfam | C54_contig_5485 | C54_contig_5485_39 | 65430 | 67115 | - | SusD_RagB | SusD-like_3 |
| TC | C54_contig_5485 | C54_contig_5485_40 | 67137 | 70286 | - | 1.B.14.6.1 |
| TF | C54_contig_5485 | C54_contig_5485_41 | 70653 | 74747 | + | HTH_AraC |
| CAZyme | C54_contig_5485 | C54_contig_5485_42 | 74716 | 76623 | - | GT51 |
| NULL(UNKNOWN) | C54_contig_5485 | C54_contig_5485_43 | 76671 | 77882 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C54_contig_5485 | C54_contig_5485_44 | 78010 | 78654 | - | 3.A.1.12.5 |
Gene ID: C54_contig_5485_21
Type: CAZyme
Location: 30527 - 32680 (+)
Type: CAZyme
Location: 30527 - 32680 (+)
Gene ID: C54_contig_5485_22
Type: pfam
Location: 33209 - 34651 (+)
Type: pfam
Location: 33209 - 34651 (+)
Gene ID: C54_contig_5485_23
Type: pfam
Location: 34659 - 36083 (+)
Type: pfam
Location: 34659 - 36083 (+)
Gene ID: C54_contig_5485_24
Type: CAZyme
Location: 36272 - 38218 (+)
Type: CAZyme
Location: 36272 - 38218 (+)
Gene ID: C54_contig_5485_25
Type: CAZyme
Location: 38440 - 39321 (+)
Type: CAZyme
Location: 38440 - 39321 (+)
Gene ID: C54_contig_5485_26
Type: CAZyme
Location: 39354 - 42578 (+)
Type: CAZyme
Location: 39354 - 42578 (+)
Gene ID: C54_contig_5485_27
Type: CAZyme
Location: 42620 - 43873 (+)
Type: CAZyme
Location: 42620 - 43873 (+)
Gene ID: C54_contig_5485_28
Type: TF
Location: 43978 - 48084 (-)
Type: TF
Location: 43978 - 48084 (-)
Gene ID: C54_contig_5485_29
Type: peptidase
Location: 48329 - 49519 (-)
Type: peptidase
Location: 48329 - 49519 (-)
Gene ID: C54_contig_5485_30
Type: CAZyme
Location: 49631 - 51661 (-)
Type: CAZyme
Location: 49631 - 51661 (-)
Gene ID: C54_contig_5485_31
Type: pfam
Location: 51710 - 52690 (-)
Type: pfam
Location: 51710 - 52690 (-)
Gene ID: C54_contig_5485_32
Type: CAZyme
Location: 52715 - 53692 (-)
Type: CAZyme
Location: 52715 - 53692 (-)
Gene ID: C54_contig_5485_33
Type: CAZyme
Location: 53714 - 56413 (-)
Type: CAZyme
Location: 53714 - 56413 (-)
Gene ID: C54_contig_5485_34
Type: TC
Location: 56431 - 57927 (-)
Type: TC
Location: 56431 - 57927 (-)
Gene ID: C54_contig_5485_35
Type: CAZyme
Location: 57959 - 59632 (-)
Type: CAZyme
Location: 57959 - 59632 (-)
Gene ID: C54_contig_5485_36
Type: CAZyme
Location: 59670 - 61397 (-)
Type: CAZyme
Location: 59670 - 61397 (-)
Gene ID: C54_contig_5485_37
Type: CAZyme
Location: 61670 - 63973 (-)
Type: CAZyme
Location: 61670 - 63973 (-)
Gene ID: C54_contig_5485_38
Type: pfam
Location: 64005 - 65414 (-)
Type: pfam
Location: 64005 - 65414 (-)
Gene ID: C54_contig_5485_39
Type: pfam
Location: 65430 - 67115 (-)
Type: pfam
Location: 65430 - 67115 (-)
Gene ID: C54_contig_5485_40
Type: TC
Location: 67137 - 70286 (-)
Type: TC
Location: 67137 - 70286 (-)
Gene ID: C54_contig_5485_41
Type: TF
Location: 70653 - 74747 (+)
Type: TF
Location: 70653 - 74747 (+)
Gene ID: C54_contig_5485_42
Type: CAZyme
Location: 74716 - 76623 (-)
Type: CAZyme
Location: 74716 - 76623 (-)
Gene ID: C54_contig_5485_43
Type:
Location: 76671 - 77882 (-)
Type:
Location: 76671 - 77882 (-)
Gene ID: C54_contig_5485_44
Type: TC
Location: 78010 - 78654 (-)
Type: TC
Location: 78010 - 78654 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides intestinalis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C54_contig_5485_25 | vegetarian > omnivore | 2.22702 | 0.00141 |
| C54_contig_5485_25 | vegan > omnivore | 2.45899 | 0.01049 |
| C54_contig_5485_27 | vegan > omnivore | 2.06573 | 0.01049 |
| C54_contig_5485_27 | vegetarian > omnivore | 2.12908 | 0.00141 |
| C54_contig_5485_30 | vegetarian > omnivore | 1.29707 | 0.00141 |
| C54_contig_5485_31 | vegan > omnivore | 1.21482 | 0.01049 |
| C54_contig_5485_31 | vegetarian > omnivore | 2.37648 | 0.00141 |
| C54_contig_5485_31 | vegetarian > vegan | 1.16166 | 0.00827 |
| C54_contig_5485_32 | vegetarian > omnivore | 1.20259 | 0.00141 |
| C54_contig_5485_33 | vegetarian > omnivore | 2.67466 | 0.00141 |
| C54_contig_5485_33 | vegetarian > vegan | 1.31495 | 0.00827 |
| C54_contig_5485_33 | vegan > omnivore | 1.35971 | 0.01049 |
| C54_contig_5485_35 | vegetarian > omnivore | 2.64646 | 0.00141 |
| C54_contig_5485_35 | vegetarian > vegan | 1.07901 | 0.00827 |
| C54_contig_5485_35 | vegan > omnivore | 1.56745 | 0.01049 |
| C54_contig_5485_36 | vegetarian > omnivore | 1.67426 | 0.00141 |
| C54_contig_5485_36 | vegan > omnivore | 1.02277 | 0.01049 |
| C54_contig_5485_41 | vegetarian > omnivore | 1.94975 | 0.00141 |
| C54_contig_5485_41 | vegan > omnivore | 1.52279 | 0.01049 |
| C54_contig_5485_42 | vegetarian > omnivore | 1.41776 | 0.00141 |