Cluster: C50.bin_3_CGC28
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate: xylan
- Genome ID: C50.bin_3
- CGC Family ID: CGCFAM_00239
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C50_contig_11 | C50_contig_11_1678 | 1877057 | 1878508 | - | GH43_7 | GH43_7 |
| NULL(UNKNOWN) | C50_contig_11 | C50_contig_11_1679 | 1878511 | 1879209 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C50_contig_11 | C50_contig_11_1680 | 1879240 | 1880391 | - | CE1 |
| CAZyme | C50_contig_11 | C50_contig_11_1681 | 1880438 | 1881568 | - | CE1 |
| TF | C50_contig_11 | C50_contig_11_1682 | 1881877 | 1885713 | + | HTH_AraC |
| pfam | C50_contig_11 | C50_contig_11_1683 | 1885782 | 1887452 | - | SusD_RagB | SusD-like_3 |
| TC | C50_contig_11 | C50_contig_11_1684 | 1887498 | 1890635 | - | 1.B.14.6.1 |
| CAZyme | C50_contig_11 | C50_contig_11_1685 | 1891066 | 1892070 | - | GH43_29 |
| NULL(UNKNOWN) | C50_contig_11 | C50_contig_11_1686 | 1892071 | 1892226 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C50_contig_11 | C50_contig_11_1687 | 1892215 | 1894701 | - | GH9 |
| CAZyme | C50_contig_11 | C50_contig_11_1688 | 1894734 | 1896062 | - | GH43_2 |
Gene ID: C50_contig_11_1678
Type: CAZyme
Location: 1877057 - 1878508 (-)
Type: CAZyme
Location: 1877057 - 1878508 (-)
Gene ID: C50_contig_11_1679
Type:
Location: 1878511 - 1879209 (-)
Type:
Location: 1878511 - 1879209 (-)
Gene ID: C50_contig_11_1680
Type: CAZyme
Location: 1879240 - 1880391 (-)
Type: CAZyme
Location: 1879240 - 1880391 (-)
Gene ID: C50_contig_11_1681
Type: CAZyme
Location: 1880438 - 1881568 (-)
Type: CAZyme
Location: 1880438 - 1881568 (-)
Gene ID: C50_contig_11_1682
Type: TF
Location: 1881877 - 1885713 (+)
Type: TF
Location: 1881877 - 1885713 (+)
Gene ID: C50_contig_11_1683
Type: pfam
Location: 1885782 - 1887452 (-)
Type: pfam
Location: 1885782 - 1887452 (-)
Gene ID: C50_contig_11_1684
Type: TC
Location: 1887498 - 1890635 (-)
Type: TC
Location: 1887498 - 1890635 (-)
Gene ID: C50_contig_11_1685
Type: CAZyme
Location: 1891066 - 1892070 (-)
Type: CAZyme
Location: 1891066 - 1892070 (-)
Gene ID: C50_contig_11_1686
Type:
Location: 1892071 - 1892226 (+)
Type:
Location: 1892071 - 1892226 (+)
Gene ID: C50_contig_11_1687
Type: CAZyme
Location: 1892215 - 1894701 (-)
Type: CAZyme
Location: 1892215 - 1894701 (-)
Gene ID: C50_contig_11_1688
Type: CAZyme
Location: 1894734 - 1896062 (-)
Type: CAZyme
Location: 1894734 - 1896062 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.