Cluster: C171.bin_2_CGC36
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: C171.bin_2
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C171_contig_233 | C171_contig_233_78 | 95894 | 96547 | - | 1.B.44.2.1 |
| NULL(UNKNOWN) | C171_contig_233 | C171_contig_233_79 | 96984 | 97367 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | C171_contig_233 | C171_contig_233_80 | 97593 | 98594 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C171_contig_233 | C171_contig_233_81 | 98623 | 100668 | + | CE20 |
| TC | C171_contig_233 | C171_contig_233_82 | 100844 | 103516 | + | 2.A.21.9.2 |
| pfam | C171_contig_233 | C171_contig_233_83 | 103667 | 103981 | - | RRM_1 |
| TF | C171_contig_233 | C171_contig_233_84 | 104012 | 104452 | - | CSD |
| TC | C171_contig_233 | C171_contig_233_85 | 104480 | 105673 | - | 1.I.1.1.3 |
| pfam | C171_contig_233 | C171_contig_233_86 | 105717 | 106787 | - | IMPDH | FMN_dh | DHO_dh | Glu_synthase | NMO |
| CAZyme | C171_contig_233 | C171_contig_233_87 | 107541 | 109499 | + | CBM62 | CBM62 |
Gene ID: C171_contig_233_78
Type: TC
Location: 95894 - 96547 (-)
Type: TC
Location: 95894 - 96547 (-)
Gene ID: C171_contig_233_79
Type:
Location: 96984 - 97367 (+)
Type:
Location: 96984 - 97367 (+)
Gene ID: C171_contig_233_80
Type:
Location: 97593 - 98594 (+)
Type:
Location: 97593 - 98594 (+)
Gene ID: C171_contig_233_81
Type: CAZyme
Location: 98623 - 100668 (+)
Type: CAZyme
Location: 98623 - 100668 (+)
Gene ID: C171_contig_233_82
Type: TC
Location: 100844 - 103516 (+)
Type: TC
Location: 100844 - 103516 (+)
Gene ID: C171_contig_233_83
Type: pfam
Location: 103667 - 103981 (-)
Type: pfam
Location: 103667 - 103981 (-)
Gene ID: C171_contig_233_84
Type: TF
Location: 104012 - 104452 (-)
Type: TF
Location: 104012 - 104452 (-)
Gene ID: C171_contig_233_85
Type: TC
Location: 104480 - 105673 (-)
Type: TC
Location: 104480 - 105673 (-)
Gene ID: C171_contig_233_86
Type: pfam
Location: 105717 - 106787 (-)
Type: pfam
Location: 105717 - 106787 (-)
Gene ID: C171_contig_233_87
Type: CAZyme
Location: 107541 - 109499 (+)
Type: CAZyme
Location: 107541 - 109499 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C171_contig_233_80 | vegetarian > omnivore | 1.28721 | 0.00566 |
| C171_contig_233_84 | vegan > omnivore | 1.08917 | 0.02089 |
| C171_contig_233_85 | vegetarian > omnivore | 1.21089 | 0.01458 |
| C171_contig_233_86 | vegetarian > omnivore | 1.27362 | 0.01458 |