Cluster: B50.CMAG_3_CGC7
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: B50.CMAG_3
- CGC Family ID: CGCFAM_03392
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | B50_contig_4164 | B50_contig_4164_797 | 1098430 | 1099914 | + | 8.A.3.3.1 |
| pfam | B50_contig_4164 | B50_contig_4164_798 | 1099960 | 1100883 | + | NTP_transf_5 |
| pfam | B50_contig_4164 | B50_contig_4164_799 | 1100880 | 1101188 | + | PqqD |
| CAZyme | B50_contig_4164 | B50_contig_4164_800 | 1101276 | 1102523 | - | GT4 |
| CAZyme | B50_contig_4164 | B50_contig_4164_801 | 1102536 | 1103483 | - | GT2 |
| CAZyme | B50_contig_4164 | B50_contig_4164_802 | 1103549 | 1104598 | - | GT4 |
| NULL(UNKNOWN) | B50_contig_4164 | B50_contig_4164_803 | 1104781 | 1106109 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | B50_contig_4164 | B50_contig_4164_804 | 1106106 | 1107233 | - | GT4 |
Gene ID: B50_contig_4164_797
Type: TC
Location: 1098430 - 1099914 (+)
Type: TC
Location: 1098430 - 1099914 (+)
Gene ID: B50_contig_4164_798
Type: pfam
Location: 1099960 - 1100883 (+)
Type: pfam
Location: 1099960 - 1100883 (+)
Gene ID: B50_contig_4164_799
Type: pfam
Location: 1100880 - 1101188 (+)
Type: pfam
Location: 1100880 - 1101188 (+)
Gene ID: B50_contig_4164_800
Type: CAZyme
Location: 1101276 - 1102523 (-)
Type: CAZyme
Location: 1101276 - 1102523 (-)
Gene ID: B50_contig_4164_801
Type: CAZyme
Location: 1102536 - 1103483 (-)
Type: CAZyme
Location: 1102536 - 1103483 (-)
Gene ID: B50_contig_4164_802
Type: CAZyme
Location: 1103549 - 1104598 (-)
Type: CAZyme
Location: 1103549 - 1104598 (-)
Gene ID: B50_contig_4164_803
Type:
Location: 1104781 - 1106109 (-)
Type:
Location: 1104781 - 1106109 (-)
Gene ID: B50_contig_4164_804
Type: CAZyme
Location: 1106106 - 1107233 (-)
Type: CAZyme
Location: 1106106 - 1107233 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Rothia
Species
Rothia sp001808955
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.