Cluster: A15.CMAG_2_CGC30
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: A15.CMAG_2
- CGC Family ID: CGCFAM_00011
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A15_contig_688 | A15_contig_688_2396 | 2534310 | 2535467 | + | GT4 |
| CAZyme | A15_contig_688 | A15_contig_688_2397 | 2535474 | 2536388 | + | GT2 |
| NULL(UNKNOWN) | A15_contig_688 | A15_contig_688_2398 | 2536345 | 2537670 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A15_contig_688 | A15_contig_688_2399 | 2537752 | 2538528 | + | 3.A.1.103.4 |
| TC | A15_contig_688 | A15_contig_688_2400 | 2538604 | 2540691 | + | 3.A.1.103.1 |
| CAZyme | A15_contig_688 | A15_contig_688_2401 | 2540714 | 2543620 | + | GT2 |
Gene ID: A15_contig_688_2396
Type: CAZyme
Location: 2534310 - 2535467 (+)
Type: CAZyme
Location: 2534310 - 2535467 (+)
Gene ID: A15_contig_688_2397
Type: CAZyme
Location: 2535474 - 2536388 (+)
Type: CAZyme
Location: 2535474 - 2536388 (+)
Gene ID: A15_contig_688_2398
Type:
Location: 2536345 - 2537670 (+)
Type:
Location: 2536345 - 2537670 (+)
Gene ID: A15_contig_688_2399
Type: TC
Location: 2537752 - 2538528 (+)
Type: TC
Location: 2537752 - 2538528 (+)
Gene ID: A15_contig_688_2400
Type: TC
Location: 2538604 - 2540691 (+)
Type: TC
Location: 2538604 - 2540691 (+)
Gene ID: A15_contig_688_2401
Type: CAZyme
Location: 2540714 - 2543620 (+)
Type: CAZyme
Location: 2540714 - 2543620 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia inulinivorans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A15_contig_688_2400 | vegetarian > vegan | 1.07526 | 0.00181 |