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Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00015580m |
Family | GT31 |
Protein Properties | Length: 538 Molecular Weight: 60939.5 Isoelectric Point: 7.5483 |
Chromosome | Chromosome/Scaffold: 060438 Start: 1 End: 3265 |
Description | Galactosyltransferase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT31 | 305 | 487 | 0 |
ERMAVRKSWMMYTRKSSNIVARFFVALNGKKEVNVELKKEAEFFHDIVIVPFIDSYDLVVLKTVAIAEYGVRVVPAKYVMKCDDDTFVRIDSVLDQVKKV QSDKSVYVGSINYFRRPLRSGKWAVTYEEWPEEVYPNYANGPGYVISSDIARYIVSEFDNQTLWLFKMEDVSMGMWVEKFNNT |
Full Sequence |
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Protein Sequence Length: 538 Download |
AAARPHLAHL QAAPAPASSA PASTSPAPPP ACPASVSVHR EQLPYDGVRV VELPCGLAVG 60 SHVTVVARPR PARLEYDPKI AERRDGEAAV MVSQFMVELV GTKAVDGEAP PRILHFNPRI 120 RGDYSRRPVI EMNSCYRMQW GQSQRCEGFA SRPAEDTVDG QLKCEKWIRD DDNKTEESKM 180 KWWVKRLIGR PKDVHISWPY PFTEGKLFVM TLTAGLEGYH VNVDGRHVAS FPYRTGYSLE 240 DATALSLNGD IDIESVFASS LPNSHPSFAP ERYLEMSEQW RAPPLPTEPV ELFIGILSAA 300 SHFAERMAVR KSWMMYTRKS SNIVARFFVA LNGKKEVNVE LKKEAEFFHD IVIVPFIDSY 360 DLVVLKTVAI AEYGVRVVPA KYVMKCDDDT FVRIDSVLDQ VKKVQSDKSV YVGSINYFRR 420 PLRSGKWAVT YEEWPEEVYP NYANGPGYVI SSDIARYIVS EFDNQTLWLF KMEDVSMGMW 480 VEKFNNTRRP VEIRHDVRFY QSGCYDGYFT AHYQSPQHMI CLWRKLQSGS AQCCNVR* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
smart00908 | Gal-bind_lectin | 1.0e-17 | 54 | 256 | 203 | + Galactoside-binding lectin. Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. Galectins (previously S-lectins) bind exclusively beta-galactosides like lactose. They do not require metal ions for activity. Galectins are found predominantly, but not exclusively in mammals. Their function is unclear. They are developmentally regulated and may be involved in differentiation, cellular regulation and tissue construction. | ||
cd00070 | GLECT | 4.0e-22 | 50 | 257 | 208 | + Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation. | ||
pfam01762 | Galactosyl_T | 1.0e-24 | 304 | 483 | 192 | + Galactosyltransferase. This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2. | ||
pfam00337 | Gal-bind_lectin | 3.0e-25 | 49 | 256 | 208 | + Galactoside-binding lectin. This family contains galactoside binding lectins. The family also includes enzymes such as human eosinophil lysophospholipase (EC:3.1.1.5). | ||
PLN03133 | PLN03133 | 3.0e-122 | 53 | 537 | 496 | + beta-1,3-galactosyltransferase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0006486 | protein glycosylation |
GO:0008378 | galactosyltransferase activity |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN34354.1 | 0 | 4 | 537 | 130 | 661 | unknown [Zea mays] |
DDBJ | BAC83183.1 | 0 | 4 | 537 | 124 | 655 | galactosyltransferase family-like protein [Oryza sativa Japonica Group] |
GenBank | EEE66738.1 | 0 | 4 | 537 | 78 | 579 | hypothetical protein OsJ_23430 [Oryza sativa Japonica Group] |
RefSeq | NP_001146977.1 | 0 | 4 | 537 | 130 | 663 | LOC100280586 [Zea mays] |
RefSeq | XP_002461635.1 | 0 | 4 | 537 | 129 | 665 | hypothetical protein SORBIDRAFT_02g005780 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL919952 | 274 | 62 | 335 | 0 |
CD440281 | 245 | 103 | 347 | 0 |
GD027359 | 234 | 111 | 344 | 0 |
DY268182 | 357 | 69 | 421 | 0 |
HO799491 | 317 | 116 | 431 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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